Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0448

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0447 and Echvi_0448 are separated by 14 nucleotidesEchvi_0448 and Echvi_0449 are separated by 106 nucleotides Echvi_0447: Echvi_0447 - hypothetical protein, at 490,376 to 491,695 _0447 Echvi_0448: Echvi_0448 - hypothetical protein, at 491,710 to 492,255 _0448 Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480 _0449 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 490.769 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.800 kb on + strand, within Echvi_0447at 490.801 kb on - strand, within Echvi_0447at 490.902 kb on - strand, within Echvi_0447at 490.910 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.937 kb on - strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.962 kb on - strand, within Echvi_0447at 490.966 kb on + strand, within Echvi_0447at 491.010 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.059 kb on - strand, within Echvi_0447at 491.084 kb on - strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.101 kb on - strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.179 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.203 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.302 kb on + strand, within Echvi_0447at 491.303 kb on - strand, within Echvi_0447at 491.306 kb on - strand, within Echvi_0447at 491.343 kb on + strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447at 491.380 kb on + strand, within Echvi_0447at 491.380 kb on + strand, within Echvi_0447at 491.381 kb on - strand, within Echvi_0447at 491.473 kb on + strand, within Echvi_0447at 491.473 kb on + strand, within Echvi_0447at 491.487 kb on + strand, within Echvi_0447at 491.487 kb on + strand, within Echvi_0447at 491.488 kb on - strand, within Echvi_0447at 491.488 kb on - strand, within Echvi_0447at 491.491 kb on + strand, within Echvi_0447at 491.543 kb on - strand, within Echvi_0447at 491.543 kb on - strand, within Echvi_0447at 491.561 kb on + strand, within Echvi_0447at 491.582 kb on - strandat 491.669 kb on + strandat 491.670 kb on - strandat 491.670 kb on - strandat 491.675 kb on - strandat 491.675 kb on - strandat 491.675 kb on - strandat 491.707 kb on - strandat 491.711 kb on + strandat 491.711 kb on + strandat 491.722 kb on + strandat 491.746 kb on + strandat 491.866 kb on - strand, within Echvi_0448at 491.870 kb on - strand, within Echvi_0448at 491.870 kb on - strand, within Echvi_0448at 491.888 kb on + strand, within Echvi_0448at 491.941 kb on + strand, within Echvi_0448at 491.942 kb on - strand, within Echvi_0448at 491.942 kb on - strand, within Echvi_0448at 491.944 kb on - strand, within Echvi_0448at 492.069 kb on + strand, within Echvi_0448at 492.071 kb on + strand, within Echvi_0448at 492.072 kb on - strand, within Echvi_0448at 492.129 kb on + strand, within Echvi_0448at 492.129 kb on + strand, within Echvi_0448at 492.130 kb on - strand, within Echvi_0448at 492.137 kb on + strand, within Echvi_0448at 492.137 kb on + strand, within Echvi_0448at 492.138 kb on - strand, within Echvi_0448at 492.138 kb on - strand, within Echvi_0448at 492.303 kb on + strandat 492.322 kb on + strandat 492.334 kb on + strandat 492.343 kb on + strandat 492.358 kb on - strandat 492.358 kb on - strandat 492.395 kb on + strandat 492.396 kb on - strandat 492.603 kb on - strand, within Echvi_0449at 492.663 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449at 492.728 kb on + strand, within Echvi_0449at 492.795 kb on + strand, within Echvi_0449at 492.796 kb on - strand, within Echvi_0449at 492.801 kb on + strand, within Echvi_0449at 492.969 kb on + strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 493.011 kb on + strand, within Echvi_0449at 493.011 kb on + strand, within Echvi_0449at 493.088 kb on + strand, within Echvi_0449at 493.246 kb on + strand, within Echvi_0449at 493.247 kb on - strand, within Echvi_0449

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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490,769 + Echvi_0447 0.30 -0.7
490,798 + Echvi_0447 0.32 -1.0
490,798 + Echvi_0447 0.32 -0.9
490,800 + Echvi_0447 0.32 +0.4
490,801 - Echvi_0447 0.32 -1.3
490,902 - Echvi_0447 0.40 -0.3
490,910 + Echvi_0447 0.40 +0.1
490,914 + Echvi_0447 0.41 -2.8
490,914 + Echvi_0447 0.41 -2.8
490,914 + Echvi_0447 0.41 +0.3
490,914 + Echvi_0447 0.41 -1.4
490,915 - Echvi_0447 0.41 +0.7
490,915 - Echvi_0447 0.41 +0.9
490,915 - Echvi_0447 0.41 +0.6
490,915 - Echvi_0447 0.41 +0.2
490,915 - Echvi_0447 0.41 +1.9
490,937 - Echvi_0447 0.42 -0.7
490,945 + Echvi_0447 0.43 -1.0
490,945 + Echvi_0447 0.43 +0.8
490,962 - Echvi_0447 0.44 +1.4
490,966 + Echvi_0447 0.45 -0.7
491,010 + Echvi_0447 0.48 -1.2
491,026 + Echvi_0447 0.49 -2.4
491,026 + Echvi_0447 0.49 +0.4
491,026 + Echvi_0447 0.49 -0.1
491,038 + Echvi_0447 0.50 +1.3
491,038 + Echvi_0447 0.50 +0.1
491,058 + Echvi_0447 0.52 +0.2
491,058 + Echvi_0447 0.52 +0.2
491,058 + Echvi_0447 0.52 +0.4
491,058 + Echvi_0447 0.52 -1.8
491,058 + Echvi_0447 0.52 -0.3
491,059 - Echvi_0447 0.52 +0.1
491,084 - Echvi_0447 0.54 +3.8
491,088 + Echvi_0447 0.54 +0.5
491,088 + Echvi_0447 0.54 +0.8
491,089 - Echvi_0447 0.54 +1.9
491,089 - Echvi_0447 0.54 -0.1
491,100 + Echvi_0447 0.55 -2.3
491,100 + Echvi_0447 0.55 -0.6
491,101 - Echvi_0447 0.55 +1.8
491,136 + Echvi_0447 0.58 +0.6
491,136 + Echvi_0447 0.58 -1.5
491,136 + Echvi_0447 0.58 +0.9
491,136 + Echvi_0447 0.58 -1.2
491,136 + Echvi_0447 0.58 -0.3
491,137 - Echvi_0447 0.58 -0.7
491,137 - Echvi_0447 0.58 -0.2
491,137 - Echvi_0447 0.58 +0.5
491,179 + Echvi_0447 0.61 -0.4
491,202 + Echvi_0447 0.63 -1.1
491,202 + Echvi_0447 0.63 +1.1
491,202 + Echvi_0447 0.63 -0.5
491,203 - Echvi_0447 0.63 +0.7
491,266 - Echvi_0447 0.67 +1.9
491,266 - Echvi_0447 0.67 +0.4
491,269 + Echvi_0447 0.68 -0.9
491,269 + Echvi_0447 0.68 +1.1
491,302 + Echvi_0447 0.70 -0.1
491,303 - Echvi_0447 0.70 -2.3
491,306 - Echvi_0447 0.70 +1.9
491,343 + Echvi_0447 0.73 -1.4
491,344 - Echvi_0447 0.73 +0.4
491,344 - Echvi_0447 0.73 -0.7
491,380 + Echvi_0447 0.76 -0.5
491,380 + Echvi_0447 0.76 -1.1
491,381 - Echvi_0447 0.76 +0.0
491,473 + Echvi_0447 0.83 -1.3
491,473 + Echvi_0447 0.83 -1.6
491,487 + Echvi_0447 0.84 -1.6
491,487 + Echvi_0447 0.84 +0.3
491,488 - Echvi_0447 0.84 +0.2
491,488 - Echvi_0447 0.84 -1.2
491,491 + Echvi_0447 0.84 +0.8
491,543 - Echvi_0447 0.88 -0.9
491,543 - Echvi_0447 0.88 -1.5
491,561 + Echvi_0447 0.90 +0.0
491,582 - -0.8
491,669 + +0.6
491,670 - -0.2
491,670 - -0.1
491,675 - +0.3
491,675 - +1.1
491,675 - -0.4
491,707 - -1.7
491,711 + -1.8
491,711 + +0.2
491,722 + +0.9
491,746 + +0.3
491,866 - Echvi_0448 0.29 +0.3
491,870 - Echvi_0448 0.29 -2.7
491,870 - Echvi_0448 0.29 -0.4
491,888 + Echvi_0448 0.33 +0.2
491,941 + Echvi_0448 0.42 +0.1
491,942 - Echvi_0448 0.42 +2.3
491,942 - Echvi_0448 0.42 +0.3
491,944 - Echvi_0448 0.43 +1.3
492,069 + Echvi_0448 0.66 +0.4
492,071 + Echvi_0448 0.66 +0.8
492,072 - Echvi_0448 0.66 -0.6
492,129 + Echvi_0448 0.77 +0.1
492,129 + Echvi_0448 0.77 +0.6
492,130 - Echvi_0448 0.77 +0.2
492,137 + Echvi_0448 0.78 +2.5
492,137 + Echvi_0448 0.78 -0.6
492,138 - Echvi_0448 0.78 +1.9
492,138 - Echvi_0448 0.78 +0.1
492,303 + -0.9
492,322 + +0.4
492,334 + -1.5
492,343 + -0.8
492,358 - -2.3
492,358 - -0.1
492,395 + -1.1
492,396 - +0.5
492,603 - Echvi_0449 0.22 +0.3
492,663 + Echvi_0449 0.27 -1.0
492,667 + Echvi_0449 0.27 -0.2
492,667 + Echvi_0449 0.27 -2.2
492,728 + Echvi_0449 0.33 +0.7
492,795 + Echvi_0449 0.39 -0.2
492,796 - Echvi_0449 0.39 -0.2
492,801 + Echvi_0449 0.39 +0.8
492,969 + Echvi_0449 0.54 -1.3
492,970 - Echvi_0449 0.54 -0.9
492,970 - Echvi_0449 0.54 -1.5
492,970 - Echvi_0449 0.54 +1.6
492,970 - Echvi_0449 0.54 +0.6
493,011 + Echvi_0449 0.58 -0.6
493,011 + Echvi_0449 0.58 +0.8
493,088 + Echvi_0449 0.65 -0.2
493,246 + Echvi_0449 0.79 -0.8
493,247 - Echvi_0449 0.79 -1.0

Or see this region's nucleotide sequence