Experiment: D-Glucuronic gamma lactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3115 and Atu3116 are separated by 266 nucleotides Atu3116 and Atu3117 are separated by 10 nucleotides
Atu3115: Atu3115 - TetR family transcriptional regulator, at 125,066 to 125,764
Atu3115
Atu3116: Atu3116 - oxidoreductase, at 126,031 to 127,152
Atu3116
Atu3117: Atu3117 - hypothetical protein, at 127,163 to 128,326
Atu3117
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1
2 at 125.190 kb on - strand, within Atu3115 at 125.216 kb on + strand, within Atu3115 at 125.542 kb on + strand, within Atu3115 at 125.592 kb on + strand, within Atu3115 at 125.612 kb on + strand, within Atu3115 at 125.655 kb on + strand, within Atu3115 at 125.663 kb on - strand, within Atu3115 at 125.717 kb on + strand at 125.717 kb on + strand at 125.717 kb on + strand at 125.725 kb on - strand at 125.725 kb on - strand at 125.903 kb on + strand at 126.046 kb on - strand at 126.063 kb on - strand at 126.132 kb on + strand at 126.143 kb on + strand at 126.159 kb on + strand, within Atu3116 at 126.266 kb on - strand, within Atu3116 at 126.266 kb on - strand, within Atu3116 at 126.408 kb on + strand, within Atu3116 at 126.423 kb on + strand, within Atu3116 at 126.426 kb on - strand, within Atu3116 at 126.625 kb on + strand, within Atu3116 at 126.665 kb on + strand, within Atu3116 at 126.674 kb on + strand, within Atu3116 at 126.685 kb on - strand, within Atu3116 at 126.705 kb on + strand, within Atu3116 at 126.713 kb on - strand, within Atu3116 at 126.713 kb on - strand, within Atu3116 at 126.751 kb on - strand, within Atu3116 at 126.775 kb on + strand, within Atu3116 at 126.780 kb on + strand, within Atu3116 at 126.819 kb on + strand, within Atu3116 at 126.827 kb on - strand, within Atu3116 at 126.886 kb on - strand, within Atu3116 at 126.967 kb on + strand, within Atu3116 at 126.995 kb on + strand, within Atu3116 at 126.995 kb on + strand, within Atu3116 at 127.108 kb on - strand at 127.178 kb on - strand at 127.256 kb on + strand at 127.264 kb on - strand at 127.392 kb on + strand, within Atu3117 at 127.394 kb on - strand, within Atu3117 at 127.408 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.430 kb on + strand, within Atu3117 at 127.559 kb on - strand, within Atu3117 at 127.687 kb on - strand, within Atu3117 at 127.691 kb on + strand, within Atu3117 at 127.753 kb on + strand, within Atu3117 at 127.867 kb on + strand, within Atu3117 at 127.905 kb on - strand, within Atu3117 at 127.931 kb on - strand, within Atu3117 at 127.946 kb on - strand, within Atu3117 at 127.974 kb on - strand, within Atu3117 at 128.016 kb on + strand, within Atu3117
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic gamma lactone (C) remove 125,190 - Atu3115 0.18 -0.7 125,216 + Atu3115 0.21 -0.4 125,542 + Atu3115 0.68 -0.2 125,592 + Atu3115 0.75 -0.1 125,612 + Atu3115 0.78 -0.3 125,655 + Atu3115 0.84 -0.3 125,663 - Atu3115 0.85 +1.7 125,717 + +0.3 125,717 + +0.1 125,717 + -0.2 125,725 - +1.4 125,725 - -1.0 125,903 + +0.3 126,046 - +0.1 126,063 - -1.3 126,132 + +0.1 126,143 + +0.2 126,159 + Atu3116 0.11 -0.1 126,266 - Atu3116 0.21 -0.1 126,266 - Atu3116 0.21 -0.6 126,408 + Atu3116 0.34 -0.6 126,423 + Atu3116 0.35 +2.3 126,426 - Atu3116 0.35 +0.6 126,625 + Atu3116 0.53 -0.1 126,665 + Atu3116 0.57 -0.0 126,674 + Atu3116 0.57 +2.1 126,685 - Atu3116 0.58 -0.2 126,705 + Atu3116 0.60 -1.5 126,713 - Atu3116 0.61 +0.3 126,713 - Atu3116 0.61 -0.1 126,751 - Atu3116 0.64 +0.3 126,775 + Atu3116 0.66 -0.4 126,780 + Atu3116 0.67 +0.6 126,819 + Atu3116 0.70 -0.4 126,827 - Atu3116 0.71 +0.2 126,886 - Atu3116 0.76 -0.7 126,967 + Atu3116 0.83 -1.0 126,995 + Atu3116 0.86 -0.9 126,995 + Atu3116 0.86 -0.3 127,108 - -0.2 127,178 - +1.3 127,256 + +0.1 127,264 - -0.2 127,392 + Atu3117 0.20 -0.1 127,394 - Atu3117 0.20 -0.1 127,408 + Atu3117 0.21 -0.2 127,430 + Atu3117 0.23 +0.4 127,430 + Atu3117 0.23 +0.1 127,430 + Atu3117 0.23 -0.2 127,559 - Atu3117 0.34 +0.3 127,687 - Atu3117 0.45 -0.9 127,691 + Atu3117 0.45 +0.7 127,753 + Atu3117 0.51 -0.5 127,867 + Atu3117 0.60 -0.0 127,905 - Atu3117 0.64 +0.1 127,931 - Atu3117 0.66 -0.1 127,946 - Atu3117 0.67 +1.1 127,974 - Atu3117 0.70 +0.0 128,016 + Atu3117 0.73 +1.6
Or see this region's nucleotide sequence