Strain Fitness in Agrobacterium fabrum C58 around Atu0929

Experiment: D-Glucuronic gamma lactone (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0928 and Atu0929 are separated by 348 nucleotidesAtu0929 and Atu0930 are separated by 13 nucleotides Atu0928: Atu0928 - transcriptional regulator, LysR family, at 915,880 to 916,785 Atu0928 Atu0929: Atu0929 - amide hydrolase, at 917,134 to 918,441 Atu0929 Atu0930: Atu0930 - hypothetical protein, at 918,455 to 919,900 Atu0930 Position (kb) 917 918 919Strain fitness (log2 ratio) -2 -1 0 1at 916.340 kb on - strand, within Atu0928at 916.347 kb on + strand, within Atu0928at 916.355 kb on + strand, within Atu0928at 916.355 kb on + strand, within Atu0928at 916.363 kb on - strand, within Atu0928at 916.444 kb on + strand, within Atu0928at 916.469 kb on + strand, within Atu0928at 916.503 kb on + strand, within Atu0928at 916.503 kb on + strand, within Atu0928at 916.508 kb on + strand, within Atu0928at 916.508 kb on + strand, within Atu0928at 916.511 kb on - strand, within Atu0928at 916.511 kb on - strand, within Atu0928at 916.533 kb on - strand, within Atu0928at 916.551 kb on + strand, within Atu0928at 916.620 kb on - strand, within Atu0928at 916.649 kb on + strand, within Atu0928at 916.657 kb on - strand, within Atu0928at 916.658 kb on - strand, within Atu0928at 916.760 kb on + strandat 916.763 kb on - strandat 916.768 kb on - strandat 916.780 kb on + strandat 916.781 kb on + strandat 916.797 kb on - strandat 916.813 kb on + strandat 916.816 kb on + strandat 916.847 kb on + strandat 916.866 kb on + strandat 916.893 kb on + strandat 916.927 kb on - strandat 916.984 kb on + strandat 916.984 kb on + strandat 916.992 kb on - strandat 916.994 kb on + strandat 917.010 kb on + strandat 917.018 kb on - strandat 917.038 kb on + strandat 917.096 kb on + strandat 917.183 kb on - strandat 917.227 kb on - strandat 917.323 kb on + strand, within Atu0929at 917.503 kb on - strand, within Atu0929at 917.645 kb on + strand, within Atu0929at 917.658 kb on - strand, within Atu0929at 917.688 kb on - strand, within Atu0929at 917.740 kb on + strand, within Atu0929at 917.762 kb on + strand, within Atu0929at 917.818 kb on + strand, within Atu0929at 917.843 kb on - strand, within Atu0929at 917.862 kb on - strand, within Atu0929at 918.007 kb on + strand, within Atu0929at 918.029 kb on - strand, within Atu0929at 918.043 kb on - strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.053 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.059 kb on + strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.067 kb on - strand, within Atu0929at 918.121 kb on + strand, within Atu0929at 918.130 kb on - strand, within Atu0929at 918.207 kb on - strand, within Atu0929at 918.244 kb on + strand, within Atu0929at 918.412 kb on + strandat 918.648 kb on - strand, within Atu0930at 918.702 kb on - strand, within Atu0930at 918.729 kb on + strand, within Atu0930at 918.747 kb on + strand, within Atu0930at 918.770 kb on - strand, within Atu0930at 918.783 kb on - strand, within Atu0930at 918.797 kb on - strand, within Atu0930at 918.861 kb on + strand, within Atu0930at 918.969 kb on + strand, within Atu0930at 919.103 kb on + strand, within Atu0930at 919.166 kb on + strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.246 kb on - strand, within Atu0930at 919.325 kb on + strand, within Atu0930at 919.402 kb on + strand, within Atu0930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic gamma lactone (C)
remove
916,340 - Atu0928 0.51 +0.4
916,347 + Atu0928 0.52 -0.4
916,355 + Atu0928 0.52 +0.3
916,355 + Atu0928 0.52 -0.4
916,363 - Atu0928 0.53 +0.3
916,444 + Atu0928 0.62 -0.2
916,469 + Atu0928 0.65 -0.1
916,503 + Atu0928 0.69 +0.0
916,503 + Atu0928 0.69 -0.1
916,508 + Atu0928 0.69 -0.9
916,508 + Atu0928 0.69 -0.0
916,511 - Atu0928 0.70 -0.2
916,511 - Atu0928 0.70 -0.0
916,533 - Atu0928 0.72 +0.6
916,551 + Atu0928 0.74 -0.2
916,620 - Atu0928 0.82 -1.3
916,649 + Atu0928 0.85 -0.3
916,657 - Atu0928 0.86 -0.0
916,658 - Atu0928 0.86 -0.2
916,760 + -0.0
916,763 - +0.4
916,768 - -0.1
916,780 + -2.0
916,781 + +0.3
916,797 - +0.1
916,813 + +0.1
916,816 + +0.2
916,847 + +0.5
916,866 + -0.3
916,893 + -0.1
916,927 - +0.6
916,984 + -1.1
916,984 + +0.3
916,992 - +1.6
916,994 + +0.6
917,010 + +0.0
917,018 - +0.2
917,038 + +0.1
917,096 + +0.3
917,183 - -0.6
917,227 - +0.0
917,323 + Atu0929 0.14 -0.1
917,503 - Atu0929 0.28 -0.2
917,645 + Atu0929 0.39 -0.6
917,658 - Atu0929 0.40 +0.2
917,688 - Atu0929 0.42 -1.3
917,740 + Atu0929 0.46 -0.0
917,762 + Atu0929 0.48 +0.0
917,818 + Atu0929 0.52 -0.7
917,843 - Atu0929 0.54 +0.2
917,862 - Atu0929 0.56 -0.2
918,007 + Atu0929 0.67 -1.7
918,029 - Atu0929 0.68 -0.5
918,043 - Atu0929 0.69 +0.8
918,053 + Atu0929 0.70 +0.1
918,053 + Atu0929 0.70 +0.3
918,053 + Atu0929 0.70 +0.9
918,059 + Atu0929 0.71 -0.4
918,059 + Atu0929 0.71 +0.4
918,059 + Atu0929 0.71 -0.1
918,059 + Atu0929 0.71 -0.0
918,059 + Atu0929 0.71 -0.9
918,067 - Atu0929 0.71 -1.6
918,067 - Atu0929 0.71 +0.1
918,067 - Atu0929 0.71 +0.3
918,067 - Atu0929 0.71 +0.0
918,121 + Atu0929 0.75 +1.6
918,130 - Atu0929 0.76 -0.3
918,207 - Atu0929 0.82 +1.3
918,244 + Atu0929 0.85 +0.7
918,412 + +0.2
918,648 - Atu0930 0.13 -0.7
918,702 - Atu0930 0.17 +0.2
918,729 + Atu0930 0.19 -0.1
918,747 + Atu0930 0.20 +0.3
918,770 - Atu0930 0.22 -0.4
918,783 - Atu0930 0.23 -0.9
918,797 - Atu0930 0.24 +0.6
918,861 + Atu0930 0.28 +0.1
918,969 + Atu0930 0.36 -0.8
919,103 + Atu0930 0.45 -0.6
919,166 + Atu0930 0.49 -0.3
919,246 - Atu0930 0.55 +0.8
919,246 - Atu0930 0.55 +0.2
919,246 - Atu0930 0.55 -0.4
919,325 + Atu0930 0.60 -0.3
919,402 + Atu0930 0.65 +0.9

Or see this region's nucleotide sequence