Experiment: D-Glucuronic gamma lactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0269 and Atu0270 are separated by 0 nucleotides Atu0270 and Atu0271 are separated by 50 nucleotides Atu0271 and Atu0272 are separated by 110 nucleotides
Atu0269: Atu0269 - exodeoxyribonuclease VII large subunit, at 265,041 to 266,639
Atu0269
Atu0270: Atu0270 - mandelate racemase / muconate lactonizing enzyme family protein, at 266,640 to 267,842
Atu0270
Atu0271: Atu0271 - transcriptional regulator, GntR family, at 267,893 to 268,600
Atu0271
Atu0272: Atu0272 - transcriptional regulator, MarR family, at 268,711 to 269,196
Atu0272
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 265.954 kb on + strand, within Atu0269 at 266.137 kb on + strand, within Atu0269 at 266.189 kb on - strand, within Atu0269 at 266.196 kb on - strand, within Atu0269 at 266.334 kb on - strand, within Atu0269 at 266.336 kb on + strand, within Atu0269 at 266.339 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.386 kb on - strand, within Atu0269 at 266.546 kb on + strand at 266.549 kb on - strand at 266.605 kb on + strand at 266.641 kb on - strand at 266.717 kb on + strand at 266.760 kb on + strand at 266.775 kb on - strand, within Atu0270 at 266.791 kb on + strand, within Atu0270 at 266.865 kb on + strand, within Atu0270 at 266.907 kb on - strand, within Atu0270 at 267.070 kb on + strand, within Atu0270 at 267.095 kb on + strand, within Atu0270 at 267.138 kb on - strand, within Atu0270 at 267.159 kb on + strand, within Atu0270 at 267.187 kb on + strand, within Atu0270 at 267.189 kb on + strand, within Atu0270 at 267.195 kb on - strand, within Atu0270 at 267.324 kb on + strand, within Atu0270 at 267.329 kb on + strand, within Atu0270 at 267.335 kb on - strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.379 kb on - strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.425 kb on + strand, within Atu0270 at 267.484 kb on - strand, within Atu0270 at 267.485 kb on + strand, within Atu0270 at 267.491 kb on - strand, within Atu0270 at 267.642 kb on + strand, within Atu0270 at 267.722 kb on - strand at 267.762 kb on + strand at 267.765 kb on - strand at 267.765 kb on - strand at 267.767 kb on + strand at 267.770 kb on - strand at 267.784 kb on + strand at 267.785 kb on - strand at 267.820 kb on + strand at 267.955 kb on + strand at 268.009 kb on - strand, within Atu0271 at 268.067 kb on + strand, within Atu0271 at 268.067 kb on + strand, within Atu0271 at 268.075 kb on - strand, within Atu0271 at 268.158 kb on - strand, within Atu0271 at 268.159 kb on - strand, within Atu0271 at 268.173 kb on - strand, within Atu0271 at 268.276 kb on + strand, within Atu0271 at 268.284 kb on - strand, within Atu0271 at 268.334 kb on - strand, within Atu0271 at 268.355 kb on + strand, within Atu0271 at 268.357 kb on + strand, within Atu0271 at 268.528 kb on + strand, within Atu0271 at 268.668 kb on + strand at 268.668 kb on + strand at 268.757 kb on - strand at 268.817 kb on + strand, within Atu0272
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic gamma lactone (C) remove 265,954 + Atu0269 0.57 -0.3 266,137 + Atu0269 0.69 +0.7 266,189 - Atu0269 0.72 -0.6 266,196 - Atu0269 0.72 +0.4 266,334 - Atu0269 0.81 +1.0 266,336 + Atu0269 0.81 -2.5 266,339 + Atu0269 0.81 -0.2 266,349 + Atu0269 0.82 -0.5 266,349 + Atu0269 0.82 -0.2 266,349 + Atu0269 0.82 -0.3 266,386 - Atu0269 0.84 +0.9 266,546 + -2.3 266,549 - -0.7 266,605 + +0.7 266,641 - -0.0 266,717 + -0.2 266,760 + -1.6 266,775 - Atu0270 0.11 -1.3 266,791 + Atu0270 0.13 +0.1 266,865 + Atu0270 0.19 +0.2 266,907 - Atu0270 0.22 +0.0 267,070 + Atu0270 0.36 -0.1 267,095 + Atu0270 0.38 +1.7 267,138 - Atu0270 0.41 -0.0 267,159 + Atu0270 0.43 -0.6 267,187 + Atu0270 0.45 -0.4 267,189 + Atu0270 0.46 +0.9 267,195 - Atu0270 0.46 +0.0 267,324 + Atu0270 0.57 -0.3 267,329 + Atu0270 0.57 +0.0 267,335 - Atu0270 0.58 +0.9 267,371 + Atu0270 0.61 -0.1 267,371 + Atu0270 0.61 -1.0 267,379 - Atu0270 0.61 -1.1 267,403 + Atu0270 0.63 -0.4 267,403 + Atu0270 0.63 +0.8 267,425 + Atu0270 0.65 +0.1 267,484 - Atu0270 0.70 -0.5 267,485 + Atu0270 0.70 -0.1 267,491 - Atu0270 0.71 +0.4 267,642 + Atu0270 0.83 +0.2 267,722 - +1.5 267,762 + -0.3 267,765 - +0.3 267,765 - +0.1 267,767 + +0.7 267,770 - +0.2 267,784 + +0.1 267,785 - -0.1 267,820 + +0.0 267,955 + +0.7 268,009 - Atu0271 0.16 +1.2 268,067 + Atu0271 0.25 -0.2 268,067 + Atu0271 0.25 +0.2 268,075 - Atu0271 0.26 -0.0 268,158 - Atu0271 0.37 +0.4 268,159 - Atu0271 0.38 -0.8 268,173 - Atu0271 0.40 -0.3 268,276 + Atu0271 0.54 +0.1 268,284 - Atu0271 0.55 -0.5 268,334 - Atu0271 0.62 -0.4 268,355 + Atu0271 0.65 +0.2 268,357 + Atu0271 0.66 -0.2 268,528 + Atu0271 0.90 +0.3 268,668 + +0.5 268,668 + -0.0 268,757 - -0.2 268,817 + Atu0272 0.22 +1.7
Or see this region's nucleotide sequence