Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24250

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07265 and AMB_RS24245 are separated by 26 nucleotidesAMB_RS24245 and AMB_RS24250 are separated by 261 nucleotidesAMB_RS24250 and AMB_RS07275 overlap by 274 nucleotidesAMB_RS07275 and AMB_RS23285 overlap by 8 nucleotides AMB_RS07265: AMB_RS07265 - glycosyltransferase, at 1,567,706 to 1,568,473 _RS07265 AMB_RS24245: AMB_RS24245 - hypothetical protein, at 1,568,500 to 1,568,772 _RS24245 AMB_RS24250: AMB_RS24250 - hypothetical protein, at 1,569,034 to 1,569,900 _RS24250 AMB_RS07275: AMB_RS07275 - xylanase/chitin deacetylase, at 1,569,627 to 1,570,373 _RS07275 AMB_RS23285: AMB_RS23285 - hypothetical protein, at 1,570,366 to 1,572,357 _RS23285 Position (kb) 1569 1570Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1568.126 kb on + strand, within AMB_RS07265at 1568.214 kb on + strand, within AMB_RS07265at 1568.214 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.364 kb on + strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.499 kb on - strandat 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1569.040 kb on - strandat 1569.057 kb on + strandat 1569.209 kb on + strand, within AMB_RS24250at 1569.399 kb on + strand, within AMB_RS24250at 1569.626 kb on - strand, within AMB_RS24250at 1569.626 kb on - strand, within AMB_RS24250at 1569.932 kb on - strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.273 kb on + strand, within AMB_RS07275at 1570.274 kb on - strand, within AMB_RS07275at 1570.274 kb on - strand, within AMB_RS07275at 1570.412 kb on + strandat 1570.412 kb on + strandat 1570.566 kb on - strand, within AMB_RS23285at 1570.740 kb on + strand, within AMB_RS23285at 1570.741 kb on - strand, within AMB_RS23285at 1570.871 kb on + strand, within AMB_RS23285

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,568,126 + AMB_RS07265 0.55 -0.8
1,568,214 + AMB_RS07265 0.66 -0.1
1,568,214 + AMB_RS07265 0.66 -2.4
1,568,362 + AMB_RS07265 0.85 -3.5
1,568,362 + AMB_RS07265 0.85 +0.8
1,568,362 + AMB_RS07265 0.85 -1.7
1,568,362 + AMB_RS07265 0.85 -0.1
1,568,362 + AMB_RS07265 0.85 -1.5
1,568,362 + AMB_RS07265 0.85 -1.4
1,568,362 + AMB_RS07265 0.85 -0.1
1,568,362 + AMB_RS07265 0.85 +4.6
1,568,362 + AMB_RS07265 0.85 -2.4
1,568,363 - AMB_RS07265 0.86 -1.1
1,568,363 - AMB_RS07265 0.86 +0.1
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,363 - AMB_RS07265 0.86 -0.3
1,568,363 - AMB_RS07265 0.86 -1.1
1,568,363 - AMB_RS07265 0.86 -2.2
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,363 - AMB_RS07265 0.86 -4.2
1,568,364 + AMB_RS07265 0.86 -1.2
1,568,365 - AMB_RS07265 0.86 +0.1
1,568,365 - AMB_RS07265 0.86 -1.9
1,568,365 - AMB_RS07265 0.86 -2.6
1,568,499 - -0.1
1,568,549 + AMB_RS24245 0.18 -1.1
1,568,549 + AMB_RS24245 0.18 -1.5
1,568,549 + AMB_RS24245 0.18 -2.2
1,568,549 + AMB_RS24245 0.18 -2.2
1,568,550 - AMB_RS24245 0.18 -1.8
1,568,550 - AMB_RS24245 0.18 +0.5
1,568,550 - AMB_RS24245 0.18 -1.5
1,568,550 - AMB_RS24245 0.18 -1.1
1,569,040 - +0.3
1,569,057 + -0.8
1,569,209 + AMB_RS24250 0.20 +1.5
1,569,399 + AMB_RS24250 0.42 +0.1
1,569,626 - AMB_RS24250 0.68 +0.5
1,569,626 - AMB_RS24250 0.68 -0.3
1,569,932 - AMB_RS07275 0.41 -0.2
1,570,273 + AMB_RS07275 0.86 -0.4
1,570,273 + AMB_RS07275 0.86 +1.5
1,570,273 + AMB_RS07275 0.86 -1.5
1,570,273 + AMB_RS07275 0.86 -1.1
1,570,273 + AMB_RS07275 0.86 +0.2
1,570,273 + AMB_RS07275 0.86 +0.0
1,570,274 - AMB_RS07275 0.87 -2.1
1,570,274 - AMB_RS07275 0.87 -2.2
1,570,412 + -4.9
1,570,412 + -1.1
1,570,566 - AMB_RS23285 0.10 -1.3
1,570,740 + AMB_RS23285 0.19 -3.2
1,570,741 - AMB_RS23285 0.19 -3.3
1,570,871 + AMB_RS23285 0.25 -0.6

Or see this region's nucleotide sequence