Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19550 and AMB_RS23795 are separated by 136 nucleotides AMB_RS23795 and AMB_RS19560 overlap by 4 nucleotides
AMB_RS19550: AMB_RS19550 - DUF58 domain-containing protein, at 4,268,664 to 4,269,554
_RS19550
AMB_RS23795: AMB_RS23795 - hypothetical protein, at 4,269,691 to 4,272,383
_RS23795
AMB_RS19560: AMB_RS19560 - membrane protein, at 4,272,380 to 4,274,434
_RS19560
Position (kb) 4269
4270
4271
4272
4273 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4268.910 kb on + strand, within AMB_RS19550 at 4268.910 kb on + strand, within AMB_RS19550 at 4268.911 kb on - strand, within AMB_RS19550 at 4268.911 kb on - strand, within AMB_RS19550 at 4269.330 kb on + strand, within AMB_RS19550 at 4269.411 kb on + strand, within AMB_RS19550 at 4269.411 kb on + strand, within AMB_RS19550 at 4270.696 kb on + strand, within AMB_RS23795 at 4270.696 kb on + strand, within AMB_RS23795 at 4270.697 kb on - strand, within AMB_RS23795 at 4270.699 kb on + strand, within AMB_RS23795 at 4270.699 kb on + strand, within AMB_RS23795 at 4270.700 kb on - strand, within AMB_RS23795 at 4270.700 kb on - strand, within AMB_RS23795 at 4270.700 kb on - strand, within AMB_RS23795 at 4270.700 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4270.781 kb on - strand, within AMB_RS23795 at 4271.155 kb on - strand, within AMB_RS23795 at 4271.409 kb on + strand, within AMB_RS23795 at 4271.410 kb on - strand, within AMB_RS23795 at 4271.410 kb on - strand, within AMB_RS23795 at 4271.410 kb on - strand, within AMB_RS23795 at 4271.410 kb on - strand, within AMB_RS23795 at 4271.863 kb on - strand, within AMB_RS23795 at 4271.925 kb on + strand, within AMB_RS23795 at 4271.925 kb on + strand, within AMB_RS23795 at 4271.926 kb on - strand, within AMB_RS23795 at 4271.926 kb on - strand, within AMB_RS23795 at 4272.090 kb on + strand, within AMB_RS23795 at 4272.091 kb on - strand, within AMB_RS23795 at 4272.091 kb on - strand, within AMB_RS23795 at 4272.286 kb on - strand at 4272.312 kb on + strand at 4272.312 kb on + strand at 4272.312 kb on + strand at 4272.312 kb on + strand at 4272.313 kb on - strand at 4272.330 kb on + strand at 4272.331 kb on - strand at 4272.331 kb on - strand at 4272.331 kb on - strand at 4272.331 kb on - strand at 4272.598 kb on - strand, within AMB_RS19560
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,268,910 + AMB_RS19550 0.28 +0.7 4,268,910 + AMB_RS19550 0.28 +0.2 4,268,911 - AMB_RS19550 0.28 -1.6 4,268,911 - AMB_RS19550 0.28 +1.0 4,269,330 + AMB_RS19550 0.75 +0.1 4,269,411 + AMB_RS19550 0.84 +0.4 4,269,411 + AMB_RS19550 0.84 -2.5 4,270,696 + AMB_RS23795 0.37 -0.1 4,270,696 + AMB_RS23795 0.37 +0.7 4,270,697 - AMB_RS23795 0.37 -0.6 4,270,699 + AMB_RS23795 0.37 -0.3 4,270,699 + AMB_RS23795 0.37 +0.9 4,270,700 - AMB_RS23795 0.37 -0.3 4,270,700 - AMB_RS23795 0.37 -0.3 4,270,700 - AMB_RS23795 0.37 -2.5 4,270,700 - AMB_RS23795 0.37 -0.6 4,270,781 - AMB_RS23795 0.40 +0.9 4,270,781 - AMB_RS23795 0.40 -1.1 4,270,781 - AMB_RS23795 0.40 -3.0 4,270,781 - AMB_RS23795 0.40 -2.5 4,270,781 - AMB_RS23795 0.40 -0.1 4,270,781 - AMB_RS23795 0.40 -0.5 4,271,155 - AMB_RS23795 0.54 -1.7 4,271,409 + AMB_RS23795 0.64 -2.5 4,271,410 - AMB_RS23795 0.64 -0.8 4,271,410 - AMB_RS23795 0.64 -1.3 4,271,410 - AMB_RS23795 0.64 +0.2 4,271,410 - AMB_RS23795 0.64 -0.2 4,271,863 - AMB_RS23795 0.81 -0.3 4,271,925 + AMB_RS23795 0.83 +0.4 4,271,925 + AMB_RS23795 0.83 -2.2 4,271,926 - AMB_RS23795 0.83 -0.3 4,271,926 - AMB_RS23795 0.83 -0.6 4,272,090 + AMB_RS23795 0.89 +0.2 4,272,091 - AMB_RS23795 0.89 -0.8 4,272,091 - AMB_RS23795 0.89 -1.7 4,272,286 - +0.2 4,272,312 + -2.5 4,272,312 + -1.4 4,272,312 + -1.4 4,272,312 + -0.3 4,272,313 - -2.0 4,272,330 + +0.1 4,272,331 - -2.0 4,272,331 - -2.0 4,272,331 - -0.5 4,272,331 - -0.6 4,272,598 - AMB_RS19560 0.11 -1.1
Or see this region's nucleotide sequence