Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23320

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS24320 and AMB_RS08730 are separated by 397 nucleotidesAMB_RS08730 and AMB_RS23320 are separated by 275 nucleotidesAMB_RS23320 and AMB_RS08745 are separated by 8 nucleotidesAMB_RS08745 and AMB_RS08750 are separated by 147 nucleotides AMB_RS24320: AMB_RS24320 - formylglycine-generating enzyme family protein, at 1,869,435 to 1,870,937 _RS24320 AMB_RS08730: AMB_RS08730 - hypothetical protein, at 1,871,335 to 1,871,514 _RS08730 AMB_RS23320: AMB_RS23320 - hypothetical protein, at 1,871,790 to 1,873,787 _RS23320 AMB_RS08745: AMB_RS08745 - hypothetical protein, at 1,873,796 to 1,874,125 _RS08745 AMB_RS08750: AMB_RS08750 - site-specific integrase, at 1,874,273 to 1,875,061 _RS08750 Position (kb) 1871 1872 1873 1874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1871.091 kb on - strandat 1871.115 kb on + strandat 1871.254 kb on - strandat 1871.272 kb on - strandat 1871.272 kb on - strandat 1871.645 kb on + strandat 1871.726 kb on - strandat 1871.728 kb on - strandat 1872.054 kb on + strand, within AMB_RS23320at 1872.054 kb on + strand, within AMB_RS23320at 1872.054 kb on + strand, within AMB_RS23320at 1872.378 kb on + strand, within AMB_RS23320at 1872.379 kb on - strand, within AMB_RS23320at 1872.379 kb on - strand, within AMB_RS23320at 1872.379 kb on - strand, within AMB_RS23320at 1872.379 kb on - strand, within AMB_RS23320at 1872.379 kb on - strand, within AMB_RS23320at 1872.525 kb on + strand, within AMB_RS23320at 1872.795 kb on + strand, within AMB_RS23320at 1872.795 kb on + strand, within AMB_RS23320at 1872.795 kb on + strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.796 kb on - strand, within AMB_RS23320at 1872.866 kb on + strand, within AMB_RS23320at 1872.898 kb on + strand, within AMB_RS23320at 1873.025 kb on + strand, within AMB_RS23320at 1873.025 kb on + strand, within AMB_RS23320at 1873.026 kb on - strand, within AMB_RS23320at 1873.026 kb on - strand, within AMB_RS23320at 1873.080 kb on + strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.081 kb on - strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.272 kb on + strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.273 kb on - strand, within AMB_RS23320at 1873.323 kb on + strand, within AMB_RS23320at 1873.323 kb on + strand, within AMB_RS23320at 1873.324 kb on - strand, within AMB_RS23320at 1873.335 kb on + strand, within AMB_RS23320at 1873.336 kb on - strand, within AMB_RS23320at 1873.446 kb on + strand, within AMB_RS23320at 1873.447 kb on - strand, within AMB_RS23320at 1873.603 kb on + strandat 1873.611 kb on + strandat 1873.612 kb on - strandat 1873.612 kb on - strandat 1873.614 kb on + strandat 1873.615 kb on - strandat 1873.615 kb on - strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.689 kb on + strandat 1873.690 kb on - strandat 1873.690 kb on - strandat 1873.724 kb on + strandat 1873.796 kb on - strandat 1873.811 kb on - strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.821 kb on + strandat 1873.822 kb on - strandat 1873.822 kb on - strandat 1873.935 kb on + strand, within AMB_RS08745at 1873.940 kb on - strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.032 kb on + strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.033 kb on - strand, within AMB_RS08745at 1874.050 kb on + strand, within AMB_RS08745at 1874.062 kb on + strand, within AMB_RS08745at 1874.081 kb on + strand, within AMB_RS08745at 1874.081 kb on + strand, within AMB_RS08745at 1874.082 kb on - strand, within AMB_RS08745at 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.105 kb on + strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.106 kb on - strandat 1874.137 kb on + strandat 1874.137 kb on + strandat 1874.158 kb on + strandat 1874.180 kb on + strandat 1874.346 kb on + strandat 1874.346 kb on + strandat 1874.346 kb on + strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.347 kb on - strandat 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.445 kb on + strand, within AMB_RS08750at 1874.446 kb on - strand, within AMB_RS08750at 1874.565 kb on - strand, within AMB_RS08750at 1874.565 kb on - strand, within AMB_RS08750at 1874.662 kb on + strand, within AMB_RS08750at 1874.662 kb on + strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.663 kb on - strand, within AMB_RS08750at 1874.729 kb on + strand, within AMB_RS08750at 1874.729 kb on + strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.730 kb on - strand, within AMB_RS08750at 1874.786 kb on - strand, within AMB_RS08750

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,871,091 - -0.7
1,871,115 + -0.3
1,871,254 - -1.4
1,871,272 - -1.4
1,871,272 - -1.2
1,871,645 + -0.4
1,871,726 - +0.0
1,871,728 - -0.7
1,872,054 + AMB_RS23320 0.13 +3.9
1,872,054 + AMB_RS23320 0.13 -1.2
1,872,054 + AMB_RS23320 0.13 +1.6
1,872,378 + AMB_RS23320 0.29 -1.2
1,872,379 - AMB_RS23320 0.29 -1.1
1,872,379 - AMB_RS23320 0.29 -0.4
1,872,379 - AMB_RS23320 0.29 -0.0
1,872,379 - AMB_RS23320 0.29 -0.5
1,872,379 - AMB_RS23320 0.29 -3.2
1,872,525 + AMB_RS23320 0.37 -0.0
1,872,795 + AMB_RS23320 0.50 -0.3
1,872,795 + AMB_RS23320 0.50 -2.1
1,872,795 + AMB_RS23320 0.50 -0.0
1,872,796 - AMB_RS23320 0.50 -1.4
1,872,796 - AMB_RS23320 0.50 -1.3
1,872,796 - AMB_RS23320 0.50 -1.0
1,872,796 - AMB_RS23320 0.50 +0.1
1,872,796 - AMB_RS23320 0.50 -0.9
1,872,866 + AMB_RS23320 0.54 +1.6
1,872,898 + AMB_RS23320 0.55 +0.6
1,873,025 + AMB_RS23320 0.62 -0.0
1,873,025 + AMB_RS23320 0.62 -0.5
1,873,026 - AMB_RS23320 0.62 -0.3
1,873,026 - AMB_RS23320 0.62 -0.4
1,873,080 + AMB_RS23320 0.65 -2.8
1,873,081 - AMB_RS23320 0.65 -2.3
1,873,081 - AMB_RS23320 0.65 -0.7
1,873,081 - AMB_RS23320 0.65 -0.1
1,873,272 + AMB_RS23320 0.74 -0.2
1,873,272 + AMB_RS23320 0.74 -0.0
1,873,272 + AMB_RS23320 0.74 -1.2
1,873,272 + AMB_RS23320 0.74 +0.4
1,873,272 + AMB_RS23320 0.74 -1.2
1,873,272 + AMB_RS23320 0.74 -0.5
1,873,272 + AMB_RS23320 0.74 -0.3
1,873,273 - AMB_RS23320 0.74 -0.4
1,873,273 - AMB_RS23320 0.74 -0.7
1,873,273 - AMB_RS23320 0.74 -0.7
1,873,273 - AMB_RS23320 0.74 -1.2
1,873,273 - AMB_RS23320 0.74 -1.4
1,873,273 - AMB_RS23320 0.74 -0.4
1,873,273 - AMB_RS23320 0.74 -0.0
1,873,323 + AMB_RS23320 0.77 -1.4
1,873,323 + AMB_RS23320 0.77 -0.0
1,873,324 - AMB_RS23320 0.77 -2.0
1,873,335 + AMB_RS23320 0.77 -3.5
1,873,336 - AMB_RS23320 0.77 -2.7
1,873,446 + AMB_RS23320 0.83 +1.1
1,873,447 - AMB_RS23320 0.83 -1.0
1,873,603 + -0.3
1,873,611 + +0.5
1,873,612 - -0.8
1,873,612 - -1.0
1,873,614 + -1.2
1,873,615 - -2.1
1,873,615 - -0.2
1,873,689 + -1.2
1,873,689 + +0.2
1,873,689 + -1.4
1,873,690 - -1.6
1,873,690 - -0.7
1,873,724 + -1.3
1,873,796 - +0.6
1,873,811 - -0.2
1,873,821 + -0.7
1,873,821 + -0.2
1,873,821 + -0.8
1,873,821 + -1.4
1,873,822 - -0.8
1,873,822 - -2.2
1,873,935 + AMB_RS08745 0.42 -0.5
1,873,940 - AMB_RS08745 0.44 +1.8
1,874,032 + AMB_RS08745 0.72 -0.4
1,874,032 + AMB_RS08745 0.72 +1.2
1,874,032 + AMB_RS08745 0.72 -0.8
1,874,033 - AMB_RS08745 0.72 +1.6
1,874,033 - AMB_RS08745 0.72 -1.4
1,874,033 - AMB_RS08745 0.72 -0.8
1,874,050 + AMB_RS08745 0.77 -2.2
1,874,062 + AMB_RS08745 0.81 -0.3
1,874,081 + AMB_RS08745 0.86 -0.5
1,874,081 + AMB_RS08745 0.86 -2.4
1,874,082 - AMB_RS08745 0.87 -2.6
1,874,105 + -1.2
1,874,105 + -0.4
1,874,105 + +0.7
1,874,105 + +0.3
1,874,105 + -0.0
1,874,106 - -0.1
1,874,106 - +0.8
1,874,106 - -0.0
1,874,106 - -0.4
1,874,137 + -2.1
1,874,137 + -0.4
1,874,158 + -0.8
1,874,180 + +1.1
1,874,346 + -1.2
1,874,346 + +0.2
1,874,346 + -1.0
1,874,347 - -0.6
1,874,347 - -0.8
1,874,347 - -0.4
1,874,347 - -1.8
1,874,347 - -0.5
1,874,347 - -0.0
1,874,445 + AMB_RS08750 0.22 -1.4
1,874,445 + AMB_RS08750 0.22 +1.0
1,874,445 + AMB_RS08750 0.22 -2.2
1,874,445 + AMB_RS08750 0.22 +0.4
1,874,445 + AMB_RS08750 0.22 -2.0
1,874,445 + AMB_RS08750 0.22 +0.5
1,874,446 - AMB_RS08750 0.22 -0.8
1,874,565 - AMB_RS08750 0.37 -3.8
1,874,565 - AMB_RS08750 0.37 -1.2
1,874,662 + AMB_RS08750 0.49 -0.1
1,874,662 + AMB_RS08750 0.49 +1.1
1,874,663 - AMB_RS08750 0.49 -0.6
1,874,663 - AMB_RS08750 0.49 -0.8
1,874,663 - AMB_RS08750 0.49 +1.6
1,874,663 - AMB_RS08750 0.49 -1.9
1,874,663 - AMB_RS08750 0.49 -2.7
1,874,663 - AMB_RS08750 0.49 -3.0
1,874,729 + AMB_RS08750 0.58 -0.5
1,874,729 + AMB_RS08750 0.58 -0.2
1,874,730 - AMB_RS08750 0.58 -0.1
1,874,730 - AMB_RS08750 0.58 -1.9
1,874,730 - AMB_RS08750 0.58 -2.3
1,874,730 - AMB_RS08750 0.58 -4.0
1,874,730 - AMB_RS08750 0.58 -1.6
1,874,786 - AMB_RS08750 0.65 -0.0

Or see this region's nucleotide sequence