Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07380 and AMB_RS07385 are separated by 98 nucleotides AMB_RS07385 and AMB_RS23290 are separated by 6 nucleotides AMB_RS23290 and AMB_RS07400 are separated by 13 nucleotides
AMB_RS07380: AMB_RS07380 - asparagine synthase, at 1,592,490 to 1,594,364
_RS07380
AMB_RS07385: AMB_RS07385 - PqqD family protein, at 1,594,463 to 1,594,726
_RS07385
AMB_RS23290: AMB_RS23290 - methyltransferase domain-containing protein, at 1,594,733 to 1,595,965
_RS23290
AMB_RS07400: AMB_RS07400 - ABC transporter ATP-binding protein, at 1,595,979 to 1,597,754
_RS07400
Position (kb)
1594
1595
1596 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1593.969 kb on - strand, within AMB_RS07380 at 1593.969 kb on - strand, within AMB_RS07380 at 1593.969 kb on - strand, within AMB_RS07380 at 1594.293 kb on + strand at 1594.294 kb on - strand at 1594.406 kb on + strand at 1594.406 kb on + strand at 1594.407 kb on - strand at 1594.407 kb on - strand at 1594.544 kb on + strand, within AMB_RS07385 at 1594.545 kb on - strand, within AMB_RS07385 at 1594.547 kb on + strand, within AMB_RS07385 at 1594.548 kb on - strand, within AMB_RS07385 at 1594.573 kb on + strand, within AMB_RS07385 at 1594.637 kb on + strand, within AMB_RS07385 at 1594.638 kb on - strand, within AMB_RS07385 at 1594.793 kb on + strand at 1594.793 kb on + strand at 1594.794 kb on - strand at 1594.814 kb on + strand at 1594.815 kb on - strand at 1594.892 kb on + strand, within AMB_RS23290 at 1594.893 kb on - strand, within AMB_RS23290 at 1594.926 kb on + strand, within AMB_RS23290 at 1594.926 kb on + strand, within AMB_RS23290 at 1594.926 kb on + strand, within AMB_RS23290 at 1594.927 kb on - strand, within AMB_RS23290 at 1594.927 kb on - strand, within AMB_RS23290 at 1594.927 kb on - strand, within AMB_RS23290 at 1595.066 kb on + strand, within AMB_RS23290 at 1595.168 kb on + strand, within AMB_RS23290 at 1595.168 kb on + strand, within AMB_RS23290 at 1595.168 kb on + strand, within AMB_RS23290 at 1595.169 kb on - strand, within AMB_RS23290 at 1595.194 kb on - strand, within AMB_RS23290 at 1595.194 kb on - strand, within AMB_RS23290 at 1595.194 kb on - strand, within AMB_RS23290 at 1595.194 kb on - strand, within AMB_RS23290 at 1595.321 kb on + strand, within AMB_RS23290 at 1595.321 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.408 kb on + strand, within AMB_RS23290 at 1595.409 kb on - strand, within AMB_RS23290 at 1596.225 kb on + strand, within AMB_RS07400 at 1596.226 kb on - strand, within AMB_RS07400 at 1596.226 kb on - strand, within AMB_RS07400 at 1596.226 kb on - strand, within AMB_RS07400 at 1596.226 kb on - strand, within AMB_RS07400 at 1596.300 kb on + strand, within AMB_RS07400 at 1596.300 kb on + strand, within AMB_RS07400 at 1596.300 kb on + strand, within AMB_RS07400 at 1596.300 kb on + strand, within AMB_RS07400 at 1596.301 kb on - strand, within AMB_RS07400 at 1596.301 kb on - strand, within AMB_RS07400 at 1596.301 kb on - strand, within AMB_RS07400 at 1596.301 kb on - strand, within AMB_RS07400 at 1596.873 kb on + strand, within AMB_RS07400 at 1596.873 kb on + strand, within AMB_RS07400 at 1596.873 kb on + strand, within AMB_RS07400 at 1596.873 kb on + strand, within AMB_RS07400 at 1596.874 kb on - strand, within AMB_RS07400 at 1596.874 kb on - strand, within AMB_RS07400 at 1596.874 kb on - strand, within AMB_RS07400 at 1596.875 kb on + strand, within AMB_RS07400 at 1596.875 kb on + strand, within AMB_RS07400 at 1596.876 kb on - strand, within AMB_RS07400 at 1596.937 kb on + strand, within AMB_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,593,969 - AMB_RS07380 0.79 -0.4 1,593,969 - AMB_RS07380 0.79 -0.5 1,593,969 - AMB_RS07380 0.79 -1.1 1,594,293 + -0.8 1,594,294 - -2.7 1,594,406 + -0.8 1,594,406 + -1.9 1,594,407 - -1.1 1,594,407 - -1.3 1,594,544 + AMB_RS07385 0.31 -1.7 1,594,545 - AMB_RS07385 0.31 -2.4 1,594,547 + AMB_RS07385 0.32 -1.7 1,594,548 - AMB_RS07385 0.32 +0.1 1,594,573 + AMB_RS07385 0.42 -2.5 1,594,637 + AMB_RS07385 0.66 -0.4 1,594,638 - AMB_RS07385 0.66 -0.1 1,594,793 + -0.1 1,594,793 + -2.2 1,594,794 - -0.8 1,594,814 + -0.2 1,594,815 - -0.9 1,594,892 + AMB_RS23290 0.13 -1.3 1,594,893 - AMB_RS23290 0.13 -0.4 1,594,926 + AMB_RS23290 0.16 +0.1 1,594,926 + AMB_RS23290 0.16 +1.1 1,594,926 + AMB_RS23290 0.16 +4.1 1,594,927 - AMB_RS23290 0.16 -1.1 1,594,927 - AMB_RS23290 0.16 -0.1 1,594,927 - AMB_RS23290 0.16 -1.2 1,595,066 + AMB_RS23290 0.27 +0.2 1,595,168 + AMB_RS23290 0.35 -0.3 1,595,168 + AMB_RS23290 0.35 +0.3 1,595,168 + AMB_RS23290 0.35 -0.5 1,595,169 - AMB_RS23290 0.35 -0.3 1,595,194 - AMB_RS23290 0.37 -1.3 1,595,194 - AMB_RS23290 0.37 +0.4 1,595,194 - AMB_RS23290 0.37 -1.7 1,595,194 - AMB_RS23290 0.37 -0.5 1,595,321 + AMB_RS23290 0.48 +1.1 1,595,321 + AMB_RS23290 0.48 +0.5 1,595,408 + AMB_RS23290 0.55 -0.8 1,595,408 + AMB_RS23290 0.55 +1.5 1,595,408 + AMB_RS23290 0.55 -1.4 1,595,408 + AMB_RS23290 0.55 -2.7 1,595,408 + AMB_RS23290 0.55 -0.1 1,595,408 + AMB_RS23290 0.55 -3.1 1,595,409 - AMB_RS23290 0.55 -1.0 1,596,225 + AMB_RS07400 0.14 -1.7 1,596,226 - AMB_RS07400 0.14 -0.4 1,596,226 - AMB_RS07400 0.14 -0.4 1,596,226 - AMB_RS07400 0.14 -1.5 1,596,226 - AMB_RS07400 0.14 -1.5 1,596,300 + AMB_RS07400 0.18 -0.6 1,596,300 + AMB_RS07400 0.18 +0.4 1,596,300 + AMB_RS07400 0.18 -2.4 1,596,300 + AMB_RS07400 0.18 -4.0 1,596,301 - AMB_RS07400 0.18 -0.8 1,596,301 - AMB_RS07400 0.18 +0.5 1,596,301 - AMB_RS07400 0.18 -1.1 1,596,301 - AMB_RS07400 0.18 -0.5 1,596,873 + AMB_RS07400 0.50 -0.8 1,596,873 + AMB_RS07400 0.50 -1.7 1,596,873 + AMB_RS07400 0.50 -1.1 1,596,873 + AMB_RS07400 0.50 -1.6 1,596,874 - AMB_RS07400 0.50 -0.3 1,596,874 - AMB_RS07400 0.50 +1.1 1,596,874 - AMB_RS07400 0.50 -0.8 1,596,875 + AMB_RS07400 0.50 -2.8 1,596,875 + AMB_RS07400 0.50 -0.9 1,596,876 - AMB_RS07400 0.51 -2.7 1,596,937 + AMB_RS07400 0.54 -0.5
Or see this region's nucleotide sequence