Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23260

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06230 and AMB_RS06235 are separated by 62 nucleotidesAMB_RS06235 and AMB_RS23260 overlap by 4 nucleotidesAMB_RS23260 and AMB_RS06245 are separated by 54 nucleotides AMB_RS06230: AMB_RS06230 - 5,6-dimethylbenzimidazole synthase, at 1,303,514 to 1,304,260 _RS06230 AMB_RS06235: AMB_RS06235 - gamma-glutamylcyclotransferase, at 1,304,323 to 1,304,883 _RS06235 AMB_RS23260: AMB_RS23260 - hypothetical protein, at 1,304,880 to 1,305,791 _RS23260 AMB_RS06245: AMB_RS06245 - hypothetical protein, at 1,305,846 to 1,306,856 _RS06245 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1303.956 kb on + strand, within AMB_RS06230at 1304.193 kb on + strandat 1304.306 kb on + strandat 1304.443 kb on + strand, within AMB_RS06235at 1304.444 kb on - strand, within AMB_RS06235at 1304.593 kb on + strand, within AMB_RS06235at 1304.599 kb on + strand, within AMB_RS06235at 1304.599 kb on + strand, within AMB_RS06235at 1304.599 kb on + strand, within AMB_RS06235at 1304.599 kb on + strand, within AMB_RS06235at 1304.599 kb on + strand, within AMB_RS06235at 1304.600 kb on - strand, within AMB_RS06235at 1304.653 kb on + strand, within AMB_RS06235at 1304.654 kb on - strand, within AMB_RS06235at 1304.654 kb on - strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.655 kb on + strand, within AMB_RS06235at 1304.656 kb on - strand, within AMB_RS06235at 1304.686 kb on + strand, within AMB_RS06235at 1304.686 kb on + strand, within AMB_RS06235at 1304.686 kb on + strand, within AMB_RS06235at 1304.686 kb on + strand, within AMB_RS06235at 1304.764 kb on + strand, within AMB_RS06235at 1304.764 kb on + strand, within AMB_RS06235at 1304.765 kb on - strand, within AMB_RS06235at 1304.765 kb on - strand, within AMB_RS06235at 1304.881 kb on + strandat 1304.882 kb on - strandat 1305.025 kb on + strand, within AMB_RS23260at 1305.025 kb on + strand, within AMB_RS23260at 1305.026 kb on - strand, within AMB_RS23260at 1305.067 kb on + strand, within AMB_RS23260at 1305.067 kb on + strand, within AMB_RS23260at 1305.095 kb on - strand, within AMB_RS23260at 1305.148 kb on + strand, within AMB_RS23260at 1305.148 kb on + strand, within AMB_RS23260at 1305.148 kb on + strand, within AMB_RS23260at 1305.148 kb on + strand, within AMB_RS23260at 1305.148 kb on + strand, within AMB_RS23260at 1305.149 kb on - strand, within AMB_RS23260at 1305.328 kb on + strand, within AMB_RS23260at 1305.328 kb on + strand, within AMB_RS23260at 1305.441 kb on + strand, within AMB_RS23260at 1305.441 kb on + strand, within AMB_RS23260at 1305.458 kb on - strand, within AMB_RS23260at 1305.496 kb on + strand, within AMB_RS23260at 1305.550 kb on - strand, within AMB_RS23260at 1305.625 kb on + strand, within AMB_RS23260at 1305.625 kb on + strand, within AMB_RS23260at 1305.625 kb on + strand, within AMB_RS23260at 1305.626 kb on - strand, within AMB_RS23260at 1305.640 kb on + strand, within AMB_RS23260at 1305.640 kb on + strand, within AMB_RS23260at 1305.640 kb on + strand, within AMB_RS23260at 1305.640 kb on + strand, within AMB_RS23260at 1305.641 kb on - strand, within AMB_RS23260at 1305.641 kb on - strand, within AMB_RS23260at 1305.727 kb on + strandat 1305.727 kb on + strandat 1305.742 kb on + strandat 1305.742 kb on + strandat 1305.742 kb on + strandat 1305.743 kb on - strandat 1305.743 kb on - strandat 1305.752 kb on + strandat 1305.752 kb on + strandat 1305.753 kb on - strandat 1305.753 kb on - strandat 1305.806 kb on - strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.807 kb on + strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.808 kb on - strandat 1305.920 kb on + strandat 1305.921 kb on - strandat 1305.921 kb on - strandat 1305.921 kb on - strandat 1306.552 kb on + strand, within AMB_RS06245at 1306.552 kb on + strand, within AMB_RS06245at 1306.552 kb on + strand, within AMB_RS06245at 1306.552 kb on + strand, within AMB_RS06245at 1306.552 kb on + strand, within AMB_RS06245at 1306.552 kb on + strand, within AMB_RS06245at 1306.553 kb on - strand, within AMB_RS06245

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,303,956 + AMB_RS06230 0.59 -2.4
1,304,193 + -1.8
1,304,306 + -1.0
1,304,443 + AMB_RS06235 0.21 +0.1
1,304,444 - AMB_RS06235 0.22 +0.2
1,304,593 + AMB_RS06235 0.48 -1.3
1,304,599 + AMB_RS06235 0.49 +1.5
1,304,599 + AMB_RS06235 0.49 +0.2
1,304,599 + AMB_RS06235 0.49 -0.8
1,304,599 + AMB_RS06235 0.49 -1.0
1,304,599 + AMB_RS06235 0.49 +1.3
1,304,600 - AMB_RS06235 0.49 -0.1
1,304,653 + AMB_RS06235 0.59 -1.0
1,304,654 - AMB_RS06235 0.59 -0.0
1,304,654 - AMB_RS06235 0.59 -0.3
1,304,655 + AMB_RS06235 0.59 -0.8
1,304,655 + AMB_RS06235 0.59 -0.5
1,304,655 + AMB_RS06235 0.59 -0.6
1,304,655 + AMB_RS06235 0.59 +0.3
1,304,655 + AMB_RS06235 0.59 +0.5
1,304,655 + AMB_RS06235 0.59 +0.8
1,304,656 - AMB_RS06235 0.59 -2.6
1,304,686 + AMB_RS06235 0.65 +0.2
1,304,686 + AMB_RS06235 0.65 -0.9
1,304,686 + AMB_RS06235 0.65 -0.7
1,304,686 + AMB_RS06235 0.65 -0.4
1,304,764 + AMB_RS06235 0.79 -0.2
1,304,764 + AMB_RS06235 0.79 -3.8
1,304,765 - AMB_RS06235 0.79 -1.6
1,304,765 - AMB_RS06235 0.79 -2.0
1,304,881 + -0.8
1,304,882 - +1.1
1,305,025 + AMB_RS23260 0.16 -1.0
1,305,025 + AMB_RS23260 0.16 -1.0
1,305,026 - AMB_RS23260 0.16 -3.0
1,305,067 + AMB_RS23260 0.21 -0.8
1,305,067 + AMB_RS23260 0.21 -1.3
1,305,095 - AMB_RS23260 0.24 -2.3
1,305,148 + AMB_RS23260 0.29 -1.9
1,305,148 + AMB_RS23260 0.29 +1.5
1,305,148 + AMB_RS23260 0.29 -2.0
1,305,148 + AMB_RS23260 0.29 -2.5
1,305,148 + AMB_RS23260 0.29 -2.9
1,305,149 - AMB_RS23260 0.29 -0.4
1,305,328 + AMB_RS23260 0.49 -0.0
1,305,328 + AMB_RS23260 0.49 +0.5
1,305,441 + AMB_RS23260 0.62 +1.5
1,305,441 + AMB_RS23260 0.62 +0.2
1,305,458 - AMB_RS23260 0.63 -1.0
1,305,496 + AMB_RS23260 0.68 -0.5
1,305,550 - AMB_RS23260 0.73 -0.2
1,305,625 + AMB_RS23260 0.82 -0.7
1,305,625 + AMB_RS23260 0.82 -0.1
1,305,625 + AMB_RS23260 0.82 -0.2
1,305,626 - AMB_RS23260 0.82 -0.6
1,305,640 + AMB_RS23260 0.83 -0.0
1,305,640 + AMB_RS23260 0.83 +0.5
1,305,640 + AMB_RS23260 0.83 -0.5
1,305,640 + AMB_RS23260 0.83 -1.1
1,305,641 - AMB_RS23260 0.83 +0.5
1,305,641 - AMB_RS23260 0.83 +0.5
1,305,727 + +0.2
1,305,727 + -1.5
1,305,742 + -0.5
1,305,742 + -0.0
1,305,742 + -1.1
1,305,743 - -0.9
1,305,743 - -2.0
1,305,752 + +3.6
1,305,752 + +0.6
1,305,753 - -3.4
1,305,753 - +0.7
1,305,806 - -1.5
1,305,807 + -0.8
1,305,807 + -0.6
1,305,807 + +1.1
1,305,807 + -0.8
1,305,807 + -1.1
1,305,807 + +1.5
1,305,807 + +1.5
1,305,807 + +0.7
1,305,807 + +0.4
1,305,808 - -0.4
1,305,808 - -0.0
1,305,808 - -0.1
1,305,808 - -0.8
1,305,808 - -0.2
1,305,808 - -2.5
1,305,808 - -0.6
1,305,920 + +0.8
1,305,921 - -1.9
1,305,921 - -0.0
1,305,921 - -1.6
1,306,552 + AMB_RS06245 0.70 -0.5
1,306,552 + AMB_RS06245 0.70 -1.3
1,306,552 + AMB_RS06245 0.70 -0.0
1,306,552 + AMB_RS06245 0.70 -2.7
1,306,552 + AMB_RS06245 0.70 -0.8
1,306,552 + AMB_RS06245 0.70 -2.9
1,306,553 - AMB_RS06245 0.70 -1.5

Or see this region's nucleotide sequence