Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS24730 and AMB_RS22810 overlap by 2 nucleotides AMB_RS22810 and AMB_RS22815 are separated by 84 nucleotides AMB_RS22815 and AMB_RS22820 overlap by 4 nucleotides AMB_RS22820 and AMB_RS22825 are separated by 21 nucleotides
AMB_RS24730: AMB_RS24730 - hypothetical protein, at 4,922,235 to 4,923,689
_RS24730
AMB_RS22810: AMB_RS22810 - hypothetical protein, at 4,923,688 to 4,923,888
_RS22810
AMB_RS22815: AMB_RS22815 - hypothetical protein, at 4,923,973 to 4,924,860
_RS22815
AMB_RS22820: AMB_RS22820 - hypothetical protein, at 4,924,857 to 4,925,177
_RS22820
AMB_RS22825: AMB_RS22825 - tape measure domain-containing protein, at 4,925,199 to 4,929,788
_RS22825
Position (kb) 4923
4924
4925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4923.222 kb on + strand, within AMB_RS24730 at 4923.222 kb on + strand, within AMB_RS24730 at 4923.222 kb on + strand, within AMB_RS24730 at 4923.283 kb on - strand, within AMB_RS24730 at 4923.724 kb on + strand, within AMB_RS22810 at 4923.955 kb on + strand at 4923.955 kb on + strand at 4923.955 kb on + strand at 4923.955 kb on + strand at 4924.088 kb on + strand, within AMB_RS22815 at 4924.089 kb on - strand, within AMB_RS22815 at 4924.108 kb on - strand, within AMB_RS22815 at 4924.143 kb on + strand, within AMB_RS22815 at 4924.143 kb on + strand, within AMB_RS22815 at 4924.143 kb on + strand, within AMB_RS22815 at 4924.143 kb on + strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.144 kb on - strand, within AMB_RS22815 at 4924.146 kb on + strand, within AMB_RS22815 at 4924.248 kb on + strand, within AMB_RS22815 at 4924.346 kb on + strand, within AMB_RS22815 at 4924.346 kb on + strand, within AMB_RS22815 at 4924.346 kb on + strand, within AMB_RS22815 at 4924.416 kb on + strand, within AMB_RS22815 at 4924.416 kb on + strand, within AMB_RS22815 at 4924.417 kb on - strand, within AMB_RS22815 at 4924.417 kb on - strand, within AMB_RS22815 at 4924.467 kb on - strand, within AMB_RS22815 at 4924.799 kb on + strand at 4924.844 kb on + strand at 4924.844 kb on + strand at 4924.844 kb on + strand at 4924.845 kb on - strand at 4924.962 kb on + strand, within AMB_RS22820 at 4924.963 kb on - strand, within AMB_RS22820 at 4925.192 kb on - strand at 4925.478 kb on + strand at 4925.478 kb on + strand at 4925.478 kb on + strand at 4925.478 kb on + strand at 4925.478 kb on + strand at 4925.478 kb on + strand at 4925.496 kb on + strand at 4925.496 kb on + strand at 4925.497 kb on - strand at 4925.559 kb on + strand at 4925.559 kb on + strand at 4925.560 kb on - strand at 4925.771 kb on + strand, within AMB_RS22825 at 4925.771 kb on + strand, within AMB_RS22825 at 4925.772 kb on - strand, within AMB_RS22825
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,923,222 + AMB_RS24730 0.68 -1.7 4,923,222 + AMB_RS24730 0.68 +0.3 4,923,222 + AMB_RS24730 0.68 -1.9 4,923,283 - AMB_RS24730 0.72 -1.5 4,923,724 + AMB_RS22810 0.18 +0.8 4,923,955 + -0.3 4,923,955 + -1.3 4,923,955 + -1.3 4,923,955 + -0.8 4,924,088 + AMB_RS22815 0.13 -0.7 4,924,089 - AMB_RS22815 0.13 -2.4 4,924,108 - AMB_RS22815 0.15 +0.8 4,924,143 + AMB_RS22815 0.19 -1.0 4,924,143 + AMB_RS22815 0.19 +0.9 4,924,143 + AMB_RS22815 0.19 +0.3 4,924,143 + AMB_RS22815 0.19 -0.6 4,924,144 - AMB_RS22815 0.19 -0.3 4,924,144 - AMB_RS22815 0.19 -2.3 4,924,144 - AMB_RS22815 0.19 +0.8 4,924,144 - AMB_RS22815 0.19 -0.6 4,924,144 - AMB_RS22815 0.19 -0.1 4,924,144 - AMB_RS22815 0.19 -0.5 4,924,146 + AMB_RS22815 0.19 -0.3 4,924,248 + AMB_RS22815 0.31 -0.5 4,924,346 + AMB_RS22815 0.42 +0.2 4,924,346 + AMB_RS22815 0.42 -0.9 4,924,346 + AMB_RS22815 0.42 -1.0 4,924,416 + AMB_RS22815 0.50 -0.3 4,924,416 + AMB_RS22815 0.50 -1.3 4,924,417 - AMB_RS22815 0.50 -1.3 4,924,417 - AMB_RS22815 0.50 -2.1 4,924,467 - AMB_RS22815 0.56 +0.3 4,924,799 + -0.2 4,924,844 + -2.6 4,924,844 + -0.9 4,924,844 + -0.7 4,924,845 - -2.6 4,924,962 + AMB_RS22820 0.33 -0.5 4,924,963 - AMB_RS22820 0.33 -1.2 4,925,192 - -1.6 4,925,478 + -0.6 4,925,478 + -0.5 4,925,478 + -0.7 4,925,478 + -0.5 4,925,478 + -0.2 4,925,478 + -1.6 4,925,496 + -0.7 4,925,496 + -0.7 4,925,497 - +0.8 4,925,559 + -1.2 4,925,559 + -3.5 4,925,560 - -1.9 4,925,771 + AMB_RS22825 0.12 +2.8 4,925,771 + AMB_RS22825 0.12 -2.3 4,925,772 - AMB_RS22825 0.12 +0.8
Or see this region's nucleotide sequence