Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22575

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
4,870,891	+		AMB_RS22565	0.17	-5.4
4,870,891	+		AMB_RS22565	0.17	+2.1
4,870,891	+		AMB_RS22565	0.17	-3.9
4,870,891	+		AMB_RS22565	0.17	-3.3
4,870,891	+		AMB_RS22565	0.17	-2.3
4,870,891	+		AMB_RS22565	0.17	-0.9
4,870,891	+		AMB_RS22565	0.17	-2.4
4,870,892	-		AMB_RS22565	0.17	-1.8
4,870,892	-		AMB_RS22565	0.17	-2.3
4,870,892	-		AMB_RS22565	0.17	-1.0
4,870,894	+		AMB_RS22565	0.18	-2.3
4,870,894	+		AMB_RS22565	0.18	-1.0
4,870,894	+		AMB_RS22565	0.18	-3.2
4,870,894	+		AMB_RS22565	0.18	-2.6
4,870,894	+		AMB_RS22565	0.18	-4.3
4,870,894	+		AMB_RS22565	0.18	-1.9
4,870,894	+		AMB_RS22565	0.18	-2.9
4,870,894	+		AMB_RS22565	0.18	-1.3
4,870,895	-		AMB_RS22565	0.18	+1.7
4,870,895	-		AMB_RS22565	0.18	-2.6
4,870,895	-		AMB_RS22565	0.18	-3.1
4,870,895	-		AMB_RS22565	0.18	-3.6
4,870,895	-		AMB_RS22565	0.18	-3.9
4,870,895	-		AMB_RS22565	0.18	-3.8
4,870,937	+		AMB_RS22565	0.28	-1.0
4,870,937	+		AMB_RS22565	0.28	-1.6
4,870,937	+		AMB_RS22565	0.28	-0.8
4,870,938	-		AMB_RS22565	0.28	-1.2
4,871,027	+		AMB_RS22565	0.49	-6.9
4,871,027	+		AMB_RS22565	0.49	-2.7
4,871,027	+		AMB_RS22565	0.49	-2.0
4,871,027	+		AMB_RS22565	0.49	-2.7
4,871,027	+		AMB_RS22565	0.49	-4.3
4,871,027	+		AMB_RS22565	0.49	-2.1
4,871,027	+		AMB_RS22565	0.49	-2.4
4,871,027	+		AMB_RS22565	0.49	-2.3
4,871,027	+		AMB_RS22565	0.49	-1.3
4,871,027	+		AMB_RS22565	0.49	-2.2
4,871,027	+		AMB_RS22565	0.49	-4.4
4,871,028	-		AMB_RS22565	0.50	-2.6
4,871,028	-		AMB_RS22565	0.50	-4.4
4,871,028	-		AMB_RS22565	0.50	-3.2
4,871,090	+		AMB_RS22565	0.64	-1.3
4,871,090	+		AMB_RS22565	0.64	-1.5
4,871,090	+		AMB_RS22565	0.64	-3.7
4,871,090	+		AMB_RS22565	0.64	-3.2
4,871,091	-		AMB_RS22565	0.65	-0.7
4,871,092	-		AMB_RS22565	0.65	+2.9
4,871,095	+		AMB_RS22565	0.65	-2.4
4,871,095	+		AMB_RS22565	0.65	-1.7
4,871,095	+		AMB_RS22565	0.65	-1.5
4,871,095	+		AMB_RS22565	0.65	-4.6
4,871,095	+		AMB_RS22565	0.65	-0.7
4,871,095	+		AMB_RS22565	0.65	-7.0
4,871,095	+		AMB_RS22565	0.65	-2.8
4,871,095	+		AMB_RS22565	0.65	-0.2
4,871,095	+		AMB_RS22565	0.65	-0.2
4,871,095	+		AMB_RS22565	0.65	-4.4
4,871,095	+		AMB_RS22565	0.65	-0.2
4,871,095	+		AMB_RS22565	0.65	-2.7
4,871,096	-		AMB_RS22565	0.66	-0.8
4,871,096	-		AMB_RS22565	0.66	-5.0
4,871,096	-		AMB_RS22565	0.66	-2.4
4,871,096	-		AMB_RS22565	0.66	-3.1
4,871,096	-		AMB_RS22565	0.66	-2.9
4,871,096	-		AMB_RS22565	0.66	-0.7
4,871,096	-		AMB_RS22565	0.66	-2.0
4,871,141	+		AMB_RS22565	0.76	-2.2
4,871,162	+		AMB_RS22565	0.81	-1.6
4,871,162	+		AMB_RS22565	0.81	-2.8
4,871,162	+		AMB_RS22565	0.81	+1.8
4,871,162	+		AMB_RS22565	0.81	-0.5
4,871,162	+		AMB_RS22565	0.81	-0.7
4,871,162	+		AMB_RS22565	0.81	-3.2
4,871,162	+		AMB_RS22565	0.81	-0.5
4,871,162	+		AMB_RS22565	0.81	-2.7
4,871,163	-		AMB_RS22565	0.82	-3.6
4,871,163	-		AMB_RS22565	0.82	-2.9
4,871,163	-		AMB_RS22565	0.82	-2.4
4,871,163	-		AMB_RS22565	0.82	-1.5
4,871,251	-				+0.2
4,871,251	-				+0.3
4,871,251	-				+0.1
4,871,414	+				-0.2
4,871,415	-				-1.6
4,871,493	+		AMB_RS22570	0.27	+0.0
4,871,493	+		AMB_RS22570	0.27	+0.3
4,871,494	-		AMB_RS22570	0.27	+2.0
4,871,542	-		AMB_RS22570	0.38	+0.8
4,871,542	-		AMB_RS22570	0.38	-1.5
4,871,613	+		AMB_RS22570	0.55	-1.2
4,871,614	-		AMB_RS22570	0.55	+1.8
4,871,614	-		AMB_RS22570	0.55	-1.2
4,871,763	+		AMB_RS22570	0.90	+0.3
4,871,764	-				+0.1
4,871,764	-				-0.4
4,871,764	-				+1.8
4,871,805	+				-1.3
4,871,806	-				-2.0
4,871,806	-				-0.2
4,871,806	-				-2.0
4,871,806	-				-0.7
4,871,806	-				-2.4
4,871,806	-				-0.2
4,871,806	-				-0.2
4,871,806	-				-0.2
4,871,962	-		AMB_RS22575	0.14	+0.8
4,871,962	-		AMB_RS22575	0.14	-0.3
4,871,962	-		AMB_RS22575	0.14	-0.2
4,872,099	+		AMB_RS22575	0.30	-4.6
4,872,099	+		AMB_RS22575	0.30	-3.2
4,872,099	+		AMB_RS22575	0.30	-5.8
4,872,100	-		AMB_RS22575	0.31	+1.8
4,872,100	-		AMB_RS22575	0.31	-0.5
4,872,144	+		AMB_RS22575	0.36	-2.6
4,872,144	+		AMB_RS22575	0.36	-0.6
4,872,145	-		AMB_RS22575	0.36	-5.2
4,872,145	-		AMB_RS22575	0.36	-1.3
4,872,145	-		AMB_RS22575	0.36	-2.5
4,872,145	-		AMB_RS22575	0.36	-3.4
4,872,146	+		AMB_RS22575	0.36	-1.4
4,872,146	+		AMB_RS22575	0.36	-3.4
4,872,147	-		AMB_RS22575	0.36	-3.0
4,872,147	-		AMB_RS22575	0.36	-1.7
4,872,147	-		AMB_RS22575	0.36	-1.2
4,872,159	+		AMB_RS22575	0.38	-2.3
4,872,160	-		AMB_RS22575	0.38	-1.3
4,872,173	+		AMB_RS22575	0.40	-3.2
4,872,173	+		AMB_RS22575	0.40	+1.8
4,872,173	+		AMB_RS22575	0.40	-1.7
4,872,173	+		AMB_RS22575	0.40	+0.8
4,872,173	+		AMB_RS22575	0.40	-0.5
4,872,174	-		AMB_RS22575	0.40	-2.6
4,872,174	-		AMB_RS22575	0.40	+0.8
4,872,174	-		AMB_RS22575	0.40	-2.2
4,872,174	-		AMB_RS22575	0.40	-1.9
4,872,174	-		AMB_RS22575	0.40	-4.4
4,872,279	+		AMB_RS22575	0.53	-1.7
4,872,279	+		AMB_RS22575	0.53	-2.0
4,872,279	+		AMB_RS22575	0.53	-1.3
4,872,279	+		AMB_RS22575	0.53	-0.2
4,872,279	+		AMB_RS22575	0.53	-1.0
4,872,279	+		AMB_RS22575	0.53	+0.3
4,872,279	+		AMB_RS22575	0.53	-2.0
4,872,279	+		AMB_RS22575	0.53	-0.5
4,872,280	-		AMB_RS22575	0.53	-2.5
4,872,280	-		AMB_RS22575	0.53	-0.9
4,872,280	-		AMB_RS22575	0.53	-0.3
4,872,366	+		AMB_RS22575	0.64	-1.0
4,872,366	+		AMB_RS22575	0.64	-0.5
4,872,366	+		AMB_RS22575	0.64	-0.2
4,872,367	-		AMB_RS22575	0.64	-0.7
4,872,367	-		AMB_RS22575	0.64	-2.6
4,872,372	+		AMB_RS22575	0.64	-2.3
4,872,372	+		AMB_RS22575	0.64	+0.8
4,872,372	+		AMB_RS22575	0.64	-0.9
4,872,372	+		AMB_RS22575	0.64	-1.6
4,872,372	+		AMB_RS22575	0.64	-2.6
4,872,372	+		AMB_RS22575	0.64	-2.6
4,872,372	+		AMB_RS22575	0.64	+0.3
4,872,373	-		AMB_RS22575	0.64	-0.7
4,872,373	-		AMB_RS22575	0.64	-1.5
4,872,373	-		AMB_RS22575	0.64	-1.0
4,872,373	-		AMB_RS22575	0.64	-2.7
4,872,507	+		AMB_RS22575	0.81	-0.5
4,872,507	+		AMB_RS22575	0.81	-2.0
4,872,612	+				-0.8
4,872,612	+				-0.2
4,872,612	+				-1.6
4,872,613	-				-2.7
4,872,613	-				-0.2
4,872,624	+				-2.1
4,872,624	+				+0.1
4,872,624	+				-0.4
4,872,624	+				+1.8
4,872,625	-				-2.7
4,872,625	-				-1.7
4,872,625	-				-0.2
4,872,625	-				+0.8
4,872,657	+				-0.3
4,872,657	+				+0.3
4,872,657	+				-1.2
4,872,657	+				-0.2
4,872,658	-				-0.5
4,872,658	-				-1.7
4,872,658	-				-1.2
4,872,658	-				-2.0
4,872,658	-				-0.2
4,872,658	-				-2.6
4,872,658	-				+0.8
4,872,780	+		AMB_RS22580	0.14	-3.4
4,872,781	-		AMB_RS22580	0.14	+0.8
4,872,792	+		AMB_RS22580	0.16	-1.5
4,872,793	-		AMB_RS22580	0.16	-1.4
4,872,793	-		AMB_RS22580	0.16	-0.9
4,872,793	-		AMB_RS22580	0.16	+0.3
4,872,873	+		AMB_RS22580	0.26	-1.5
4,872,873	+		AMB_RS22580	0.26	-1.2
4,872,873	+		AMB_RS22580	0.26	+0.0
4,872,873	+		AMB_RS22580	0.26	-4.5
4,872,874	-		AMB_RS22580	0.26	-2.0
4,872,874	-		AMB_RS22580	0.26	-1.3
4,872,874	-		AMB_RS22580	0.26	-0.5
4,872,874	-		AMB_RS22580	0.26	-2.8
4,872,874	-		AMB_RS22580	0.26	-2.6
4,872,894	+		AMB_RS22580	0.28	-1.7
4,872,894	+		AMB_RS22580	0.28	-1.0
4,872,894	+		AMB_RS22580	0.28	-0.2
4,872,894	+		AMB_RS22580	0.28	-3.9
4,872,894	+		AMB_RS22580	0.28	-1.5
4,872,894	+		AMB_RS22580	0.28	-3.5
4,872,895	-		AMB_RS22580	0.28	-1.3
4,872,895	-		AMB_RS22580	0.28	-3.8
4,872,895	-		AMB_RS22580	0.28	-1.2
4,872,895	-		AMB_RS22580	0.28	-2.1
4,872,895	-		AMB_RS22580	0.28	+0.8
4,872,895	-		AMB_RS22580	0.28	-3.5
4,872,933	+		AMB_RS22580	0.33	-1.5
4,872,934	-		AMB_RS22580	0.33	-0.5
4,873,186	+		AMB_RS22580	0.64	-0.9
4,873,187	-		AMB_RS22580	0.64	+1.8
4,873,187	-		AMB_RS22580	0.64	-1.7
4,873,224	+		AMB_RS22580	0.69	-0.6
4,873,224	+		AMB_RS22580	0.69	-0.7
4,873,224	+		AMB_RS22580	0.69	+0.3
4,873,224	+		AMB_RS22580	0.69	-2.2
4,873,225	-		AMB_RS22580	0.69	-0.7
4,873,225	-		AMB_RS22580	0.69	-3.1
4,873,225	-		AMB_RS22580	0.69	-2.1
4,873,225	-		AMB_RS22580	0.69	-1.2
4,873,225	-		AMB_RS22580	0.69	-2.4
4,873,225	-		AMB_RS22580	0.69	+0.8
4,873,226	+		AMB_RS22580	0.69	-4.0
4,873,226	+		AMB_RS22580	0.69	-1.7
4,873,226	+		AMB_RS22580	0.69	-3.3
4,873,226	+		AMB_RS22580	0.69	-1.3
4,873,227	-		AMB_RS22580	0.69	-3.1
4,873,227	-		AMB_RS22580	0.69	-1.7
4,873,227	-		AMB_RS22580	0.69	-2.4
4,873,496	-				-1.2
4,873,518	+				+0.5
4,873,553	-				-0.2
4,873,573	+				+0.3
4,873,573	+				-1.7
4,873,573	+				-2.3
4,873,573	+				-0.2
4,873,574	-				+1.8
4,873,574	-				+0.8
4,873,616	-				-0.0
4,873,647	+				-1.2