Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22500 and AMB_RS22505 are separated by 89 nucleotides AMB_RS22505 and AMB_RS22510 are separated by 104 nucleotides AMB_RS22510 and AMB_RS22515 are separated by 5 nucleotides
AMB_RS22500: AMB_RS22500 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 4,858,849 to 4,861,194
_RS22500
AMB_RS22505: AMB_RS22505 - RNA-binding S4 domain-containing protein, at 4,861,284 to 4,861,565
_RS22505
AMB_RS22510: AMB_RS22510 - alanine--glyoxylate aminotransferase family protein, at 4,861,670 to 4,862,842
_RS22510
AMB_RS22515: AMB_RS22515 - DUF2125 domain-containing protein, at 4,862,848 to 4,863,900
_RS22515
Position (kb) 4861
4862
4863 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4860.686 kb on - strand, within AMB_RS22500 at 4860.686 kb on - strand, within AMB_RS22500 at 4860.686 kb on - strand, within AMB_RS22500 at 4860.721 kb on + strand, within AMB_RS22500 at 4860.721 kb on + strand, within AMB_RS22500 at 4860.721 kb on + strand, within AMB_RS22500 at 4860.721 kb on + strand, within AMB_RS22500 at 4860.722 kb on - strand, within AMB_RS22500 at 4860.722 kb on - strand, within AMB_RS22500 at 4860.931 kb on + strand, within AMB_RS22500 at 4860.931 kb on + strand, within AMB_RS22500 at 4861.048 kb on + strand at 4861.242 kb on + strand at 4861.242 kb on + strand at 4861.242 kb on + strand at 4861.242 kb on + strand at 4861.243 kb on - strand at 4861.459 kb on - strand, within AMB_RS22505 at 4861.564 kb on - strand at 4862.071 kb on - strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.100 kb on + strand, within AMB_RS22510 at 4862.101 kb on - strand, within AMB_RS22510 at 4862.101 kb on - strand, within AMB_RS22510 at 4862.128 kb on - strand, within AMB_RS22510 at 4862.128 kb on - strand, within AMB_RS22510 at 4862.265 kb on + strand, within AMB_RS22510 at 4862.266 kb on - strand, within AMB_RS22510 at 4862.924 kb on + strand at 4862.924 kb on + strand at 4862.925 kb on - strand at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.404 kb on + strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.405 kb on - strand, within AMB_RS22515 at 4863.824 kb on + strand at 4863.824 kb on + strand at 4863.825 kb on - strand at 4863.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,860,686 - AMB_RS22500 0.78 +1.2 4,860,686 - AMB_RS22500 0.78 -1.0 4,860,686 - AMB_RS22500 0.78 -1.0 4,860,721 + AMB_RS22500 0.80 -1.0 4,860,721 + AMB_RS22500 0.80 -1.0 4,860,721 + AMB_RS22500 0.80 -2.2 4,860,721 + AMB_RS22500 0.80 -0.2 4,860,722 - AMB_RS22500 0.80 +0.3 4,860,722 - AMB_RS22500 0.80 +0.3 4,860,931 + AMB_RS22500 0.89 -1.7 4,860,931 + AMB_RS22500 0.89 -0.1 4,861,048 + +1.8 4,861,242 + -0.5 4,861,242 + -1.1 4,861,242 + -1.9 4,861,242 + -4.4 4,861,243 - -0.2 4,861,459 - AMB_RS22505 0.62 +1.2 4,861,564 - -0.2 4,862,071 - AMB_RS22510 0.34 -0.5 4,862,100 + AMB_RS22510 0.37 -1.2 4,862,100 + AMB_RS22510 0.37 -0.4 4,862,100 + AMB_RS22510 0.37 -0.9 4,862,101 - AMB_RS22510 0.37 -3.5 4,862,101 - AMB_RS22510 0.37 -0.2 4,862,128 - AMB_RS22510 0.39 -1.1 4,862,128 - AMB_RS22510 0.39 +1.1 4,862,265 + AMB_RS22510 0.51 -1.3 4,862,266 - AMB_RS22510 0.51 -0.2 4,862,924 + +1.8 4,862,924 + +0.1 4,862,925 - -1.1 4,863,404 + AMB_RS22515 0.53 +0.3 4,863,404 + AMB_RS22515 0.53 -2.7 4,863,404 + AMB_RS22515 0.53 -0.7 4,863,404 + AMB_RS22515 0.53 -2.1 4,863,404 + AMB_RS22515 0.53 +0.1 4,863,404 + AMB_RS22515 0.53 -0.3 4,863,404 + AMB_RS22515 0.53 -1.5 4,863,404 + AMB_RS22515 0.53 -1.3 4,863,405 - AMB_RS22515 0.53 +0.4 4,863,405 - AMB_RS22515 0.53 +0.8 4,863,405 - AMB_RS22515 0.53 -0.5 4,863,405 - AMB_RS22515 0.53 -0.0 4,863,405 - AMB_RS22515 0.53 -1.2 4,863,405 - AMB_RS22515 0.53 +1.8 4,863,405 - AMB_RS22515 0.53 -0.4 4,863,405 - AMB_RS22515 0.53 -0.5 4,863,405 - AMB_RS22515 0.53 -2.3 4,863,405 - AMB_RS22515 0.53 -0.5 4,863,824 + +0.3 4,863,824 + -0.2 4,863,825 - +0.8 4,863,825 - +0.0
Or see this region's nucleotide sequence