Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22300 and AMB_RS22305 are separated by 7 nucleotides AMB_RS22305 and AMB_RS22310 are separated by 248 nucleotides AMB_RS22310 and AMB_RS22315 are separated by 212 nucleotides
AMB_RS22300: AMB_RS22300 - murein biosynthesis integral membrane protein MurJ, at 4,812,941 to 4,814,488
_RS22300
AMB_RS22305: AMB_RS22305 - N-acetyltransferase, at 4,814,496 to 4,815,029
_RS22305
AMB_RS22310: AMB_RS22310 - cupredoxin domain-containing protein, at 4,815,278 to 4,815,616
_RS22310
AMB_RS22315: AMB_RS22315 - membrane protein, at 4,815,829 to 4,816,449
_RS22315
Position (kb) 4814
4815
4816 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4814.498 kb on - strand at 4814.623 kb on + strand, within AMB_RS22305 at 4814.623 kb on + strand, within AMB_RS22305 at 4814.624 kb on - strand, within AMB_RS22305 at 4814.624 kb on - strand, within AMB_RS22305 at 4814.624 kb on - strand, within AMB_RS22305 at 4814.641 kb on + strand, within AMB_RS22305 at 4814.641 kb on + strand, within AMB_RS22305 at 4814.641 kb on + strand, within AMB_RS22305 at 4814.642 kb on - strand, within AMB_RS22305 at 4814.923 kb on + strand, within AMB_RS22305 at 4814.923 kb on + strand, within AMB_RS22305 at 4814.924 kb on - strand, within AMB_RS22305 at 4814.924 kb on - strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.950 kb on + strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.951 kb on - strand, within AMB_RS22305 at 4814.953 kb on + strand, within AMB_RS22305 at 4815.082 kb on + strand at 4815.083 kb on - strand at 4815.083 kb on - strand at 4815.109 kb on + strand at 4815.109 kb on + strand at 4815.109 kb on + strand at 4815.166 kb on + strand at 4815.167 kb on - strand at 4815.248 kb on + strand at 4815.249 kb on - strand at 4815.249 kb on - strand at 4815.249 kb on - strand at 4815.251 kb on + strand at 4815.251 kb on + strand at 4815.252 kb on - strand at 4815.252 kb on - strand at 4815.252 kb on - strand at 4815.266 kb on - strand at 4815.788 kb on - strand at 4815.970 kb on + strand, within AMB_RS22315 at 4815.970 kb on + strand, within AMB_RS22315 at 4815.970 kb on + strand, within AMB_RS22315 at 4815.971 kb on - strand, within AMB_RS22315 at 4816.021 kb on + strand, within AMB_RS22315 at 4816.022 kb on - strand, within AMB_RS22315
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,814,498 - -0.7 4,814,623 + AMB_RS22305 0.24 +0.0 4,814,623 + AMB_RS22305 0.24 -1.1 4,814,624 - AMB_RS22305 0.24 +0.0 4,814,624 - AMB_RS22305 0.24 +0.4 4,814,624 - AMB_RS22305 0.24 -4.8 4,814,641 + AMB_RS22305 0.27 +0.5 4,814,641 + AMB_RS22305 0.27 -0.4 4,814,641 + AMB_RS22305 0.27 +0.3 4,814,642 - AMB_RS22305 0.27 -0.2 4,814,923 + AMB_RS22305 0.80 -5.1 4,814,923 + AMB_RS22305 0.80 +0.4 4,814,924 - AMB_RS22305 0.80 -1.0 4,814,924 - AMB_RS22305 0.80 -2.0 4,814,950 + AMB_RS22305 0.85 -1.2 4,814,950 + AMB_RS22305 0.85 -0.9 4,814,950 + AMB_RS22305 0.85 +1.8 4,814,950 + AMB_RS22305 0.85 -0.2 4,814,951 - AMB_RS22305 0.85 -3.0 4,814,951 - AMB_RS22305 0.85 -0.2 4,814,951 - AMB_RS22305 0.85 -2.5 4,814,951 - AMB_RS22305 0.85 -0.5 4,814,951 - AMB_RS22305 0.85 -1.3 4,814,951 - AMB_RS22305 0.85 -0.7 4,814,953 + AMB_RS22305 0.86 -3.5 4,815,082 + +0.8 4,815,083 - -0.0 4,815,083 - +0.8 4,815,109 + -0.4 4,815,109 + -1.0 4,815,109 + -1.7 4,815,166 + -1.3 4,815,167 - -0.5 4,815,248 + +0.8 4,815,249 - -0.5 4,815,249 - -2.4 4,815,249 - -0.2 4,815,251 + +0.4 4,815,251 + -1.2 4,815,252 - -2.2 4,815,252 - -2.6 4,815,252 - -0.7 4,815,266 - -0.2 4,815,788 - -1.2 4,815,970 + AMB_RS22315 0.23 +0.3 4,815,970 + AMB_RS22315 0.23 -1.9 4,815,970 + AMB_RS22315 0.23 -0.2 4,815,971 - AMB_RS22315 0.23 -1.4 4,816,021 + AMB_RS22315 0.31 +0.8 4,816,022 - AMB_RS22315 0.31 -1.2
Or see this region's nucleotide sequence