Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21490 and AMB_RS21495 are separated by 23 nucleotides AMB_RS21495 and AMB_RS21500 are separated by 122 nucleotides AMB_RS21500 and AMB_RS21505 overlap by 4 nucleotides
AMB_RS21490: AMB_RS21490 - DUF805 domain-containing protein, at 4,660,361 to 4,660,726
_RS21490
AMB_RS21495: AMB_RS21495 - DUF484 domain-containing protein, at 4,660,750 to 4,661,463
_RS21495
AMB_RS21500: AMB_RS21500 - primosomal protein N', at 4,661,586 to 4,663,727
_RS21500
AMB_RS21505: AMB_RS21505 - DNA helicase RecQ, at 4,663,724 to 4,665,586
_RS21505
Position (kb) 4661
4662
4663
4664 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4660.651 kb on - strand, within AMB_RS21490 at 4660.687 kb on - strand, within AMB_RS21490 at 4660.687 kb on - strand, within AMB_RS21490 at 4660.691 kb on - strand at 4660.727 kb on - strand at 4660.727 kb on - strand at 4660.752 kb on - strand at 4661.209 kb on - strand, within AMB_RS21495 at 4661.209 kb on - strand, within AMB_RS21495 at 4661.471 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.562 kb on + strand at 4663.756 kb on + strand at 4663.757 kb on - strand at 4663.757 kb on - strand at 4663.880 kb on + strand at 4663.880 kb on + strand at 4663.881 kb on - strand at 4663.881 kb on - strand at 4663.980 kb on + strand, within AMB_RS21505 at 4663.980 kb on + strand, within AMB_RS21505 at 4663.981 kb on - strand, within AMB_RS21505 at 4664.069 kb on + strand, within AMB_RS21505 at 4664.069 kb on + strand, within AMB_RS21505 at 4664.069 kb on + strand, within AMB_RS21505 at 4664.069 kb on + strand, within AMB_RS21505 at 4664.069 kb on + strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.070 kb on - strand, within AMB_RS21505 at 4664.447 kb on + strand, within AMB_RS21505 at 4664.447 kb on + strand, within AMB_RS21505 at 4664.448 kb on - strand, within AMB_RS21505 at 4664.448 kb on - strand, within AMB_RS21505 at 4664.448 kb on - strand, within AMB_RS21505 at 4664.504 kb on + strand, within AMB_RS21505 at 4664.504 kb on + strand, within AMB_RS21505 at 4664.505 kb on - strand, within AMB_RS21505 at 4664.507 kb on - strand, within AMB_RS21505 at 4664.519 kb on + strand, within AMB_RS21505 at 4664.519 kb on + strand, within AMB_RS21505 at 4664.519 kb on + strand, within AMB_RS21505 at 4664.520 kb on + strand, within AMB_RS21505 at 4664.520 kb on - strand, within AMB_RS21505 at 4664.520 kb on - strand, within AMB_RS21505 at 4664.681 kb on + strand, within AMB_RS21505 at 4664.681 kb on + strand, within AMB_RS21505 at 4664.681 kb on + strand, within AMB_RS21505 at 4664.682 kb on - strand, within AMB_RS21505 at 4664.682 kb on - strand, within AMB_RS21505 at 4664.682 kb on - strand, within AMB_RS21505 at 4664.684 kb on + strand, within AMB_RS21505 at 4664.684 kb on + strand, within AMB_RS21505 at 4664.685 kb on - strand, within AMB_RS21505 at 4664.685 kb on - strand, within AMB_RS21505 at 4664.685 kb on - strand, within AMB_RS21505 at 4664.685 kb on - strand, within AMB_RS21505 at 4664.685 kb on - strand, within AMB_RS21505
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,660,651 - AMB_RS21490 0.79 -1.1 4,660,687 - AMB_RS21490 0.89 -1.2 4,660,687 - AMB_RS21490 0.89 +1.2 4,660,691 - -0.3 4,660,727 - -2.1 4,660,727 - -0.8 4,660,752 - -1.8 4,661,209 - AMB_RS21495 0.64 +0.7 4,661,209 - AMB_RS21495 0.64 -0.8 4,661,471 - -0.8 4,661,505 - -0.5 4,661,505 - -0.1 4,661,505 - -0.1 4,661,505 - +0.7 4,661,505 - +0.8 4,661,505 - -0.5 4,661,505 - -0.2 4,661,505 - -1.2 4,661,505 - -0.6 4,661,505 - -0.7 4,661,562 + +0.4 4,663,756 + +1.8 4,663,757 - -1.4 4,663,757 - -0.3 4,663,880 + +0.2 4,663,880 + +0.2 4,663,881 - -2.1 4,663,881 - +0.7 4,663,980 + AMB_RS21505 0.14 -2.0 4,663,980 + AMB_RS21505 0.14 -4.0 4,663,981 - AMB_RS21505 0.14 -0.2 4,664,069 + AMB_RS21505 0.19 +0.0 4,664,069 + AMB_RS21505 0.19 -1.0 4,664,069 + AMB_RS21505 0.19 -1.6 4,664,069 + AMB_RS21505 0.19 -0.4 4,664,069 + AMB_RS21505 0.19 -0.5 4,664,070 - AMB_RS21505 0.19 +0.7 4,664,070 - AMB_RS21505 0.19 -1.5 4,664,070 - AMB_RS21505 0.19 -2.5 4,664,070 - AMB_RS21505 0.19 +1.0 4,664,070 - AMB_RS21505 0.19 -0.5 4,664,070 - AMB_RS21505 0.19 +0.1 4,664,070 - AMB_RS21505 0.19 +0.2 4,664,447 + AMB_RS21505 0.39 +0.8 4,664,447 + AMB_RS21505 0.39 -1.6 4,664,448 - AMB_RS21505 0.39 -0.2 4,664,448 - AMB_RS21505 0.39 -0.2 4,664,448 - AMB_RS21505 0.39 -0.9 4,664,504 + AMB_RS21505 0.42 +0.2 4,664,504 + AMB_RS21505 0.42 -0.6 4,664,505 - AMB_RS21505 0.42 -0.5 4,664,507 - AMB_RS21505 0.42 +0.8 4,664,519 + AMB_RS21505 0.43 +0.3 4,664,519 + AMB_RS21505 0.43 -0.2 4,664,519 + AMB_RS21505 0.43 +0.0 4,664,520 + AMB_RS21505 0.43 +0.0 4,664,520 - AMB_RS21505 0.43 -0.8 4,664,520 - AMB_RS21505 0.43 -2.8 4,664,681 + AMB_RS21505 0.51 -0.8 4,664,681 + AMB_RS21505 0.51 -0.2 4,664,681 + AMB_RS21505 0.51 +0.2 4,664,682 - AMB_RS21505 0.51 -0.2 4,664,682 - AMB_RS21505 0.51 -2.7 4,664,682 - AMB_RS21505 0.51 -0.2 4,664,684 + AMB_RS21505 0.52 -0.2 4,664,684 + AMB_RS21505 0.52 -1.5 4,664,685 - AMB_RS21505 0.52 +0.2 4,664,685 - AMB_RS21505 0.52 -2.2 4,664,685 - AMB_RS21505 0.52 -1.9 4,664,685 - AMB_RS21505 0.52 +0.9 4,664,685 - AMB_RS21505 0.52 -2.8
Or see this region's nucleotide sequence