Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21215

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21205 and AMB_RS21210 are separated by 50 nucleotidesAMB_RS21210 and AMB_RS21215 are separated by 92 nucleotidesAMB_RS21215 and AMB_RS21220 are separated by 72 nucleotidesAMB_RS21220 and AMB_RS21225 are separated by 130 nucleotides AMB_RS21205: AMB_RS21205 - response regulator, at 4,606,523 to 4,606,996 _RS21205 AMB_RS21210: AMB_RS21210 - hydroxyacylglutathione hydrolase, at 4,607,047 to 4,607,820 _RS21210 AMB_RS21215: AMB_RS21215 - methyltransferase domain-containing protein, at 4,607,913 to 4,608,647 _RS21215 AMB_RS21220: AMB_RS21220 - hypothetical protein, at 4,608,720 to 4,609,388 _RS21220 AMB_RS21225: AMB_RS21225 - (2Fe-2S)-binding protein, at 4,609,519 to 4,609,983 _RS21225 Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4606.920 kb on + strand, within AMB_RS21205at 4606.976 kb on + strandat 4606.976 kb on + strandat 4606.976 kb on + strandat 4606.977 kb on - strandat 4606.977 kb on - strandat 4606.977 kb on - strandat 4607.299 kb on - strand, within AMB_RS21210at 4607.299 kb on - strand, within AMB_RS21210at 4607.300 kb on + strand, within AMB_RS21210at 4607.301 kb on - strand, within AMB_RS21210at 4607.301 kb on - strand, within AMB_RS21210at 4607.301 kb on - strand, within AMB_RS21210at 4607.456 kb on + strand, within AMB_RS21210at 4607.475 kb on + strand, within AMB_RS21210at 4607.475 kb on + strand, within AMB_RS21210at 4607.476 kb on - strand, within AMB_RS21210at 4607.476 kb on - strand, within AMB_RS21210at 4607.476 kb on - strand, within AMB_RS21210at 4607.476 kb on - strand, within AMB_RS21210at 4607.476 kb on - strand, within AMB_RS21210at 4607.664 kb on + strand, within AMB_RS21210at 4607.768 kb on + strandat 4607.768 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.774 kb on + strandat 4607.775 kb on - strandat 4607.775 kb on - strandat 4607.775 kb on - strandat 4607.775 kb on - strandat 4607.789 kb on - strandat 4607.851 kb on + strandat 4607.851 kb on + strandat 4607.851 kb on + strandat 4607.852 kb on - strandat 4607.852 kb on - strandat 4608.040 kb on + strand, within AMB_RS21215at 4608.041 kb on - strand, within AMB_RS21215at 4608.041 kb on - strand, within AMB_RS21215at 4608.041 kb on - strand, within AMB_RS21215at 4608.057 kb on + strand, within AMB_RS21215at 4608.057 kb on + strand, within AMB_RS21215at 4608.058 kb on - strand, within AMB_RS21215at 4608.058 kb on - strand, within AMB_RS21215at 4608.058 kb on - strand, within AMB_RS21215at 4608.058 kb on - strand, within AMB_RS21215at 4608.058 kb on - strand, within AMB_RS21215at 4608.369 kb on + strand, within AMB_RS21215at 4608.369 kb on + strand, within AMB_RS21215at 4608.369 kb on + strand, within AMB_RS21215at 4608.370 kb on - strand, within AMB_RS21215at 4608.370 kb on - strand, within AMB_RS21215at 4608.370 kb on - strand, within AMB_RS21215at 4608.370 kb on - strand, within AMB_RS21215at 4608.370 kb on - strand, within AMB_RS21215at 4608.561 kb on + strand, within AMB_RS21215at 4608.561 kb on + strand, within AMB_RS21215at 4608.562 kb on - strand, within AMB_RS21215at 4608.562 kb on - strand, within AMB_RS21215at 4608.606 kb on + strandat 4608.645 kb on + strandat 4608.646 kb on - strandat 4608.646 kb on - strandat 4608.646 kb on - strandat 4608.653 kb on + strandat 4608.653 kb on + strandat 4608.653 kb on + strandat 4608.653 kb on + strandat 4608.653 kb on + strandat 4608.654 kb on - strandat 4608.654 kb on - strandat 4608.654 kb on - strandat 4608.657 kb on - strandat 4608.722 kb on - strandat 4608.722 kb on - strandat 4608.811 kb on + strand, within AMB_RS21220at 4608.814 kb on + strand, within AMB_RS21220at 4608.815 kb on - strand, within AMB_RS21220at 4608.815 kb on - strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.901 kb on + strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.902 kb on - strand, within AMB_RS21220at 4608.905 kb on + strand, within AMB_RS21220at 4608.906 kb on - strand, within AMB_RS21220at 4608.906 kb on - strand, within AMB_RS21220at 4608.906 kb on - strand, within AMB_RS21220at 4608.906 kb on - strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.039 kb on + strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.040 kb on - strand, within AMB_RS21220at 4609.099 kb on + strand, within AMB_RS21220at 4609.100 kb on - strand, within AMB_RS21220at 4609.159 kb on + strand, within AMB_RS21220at 4609.160 kb on - strand, within AMB_RS21220at 4609.480 kb on + strandat 4609.480 kb on + strandat 4609.625 kb on - strand, within AMB_RS21225

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,606,920 + AMB_RS21205 0.84 -0.5
4,606,976 + -1.5
4,606,976 + -1.4
4,606,976 + -0.5
4,606,977 - -1.2
4,606,977 - -1.9
4,606,977 - +1.0
4,607,299 - AMB_RS21210 0.33 -2.0
4,607,299 - AMB_RS21210 0.33 +0.8
4,607,300 + AMB_RS21210 0.33 -1.9
4,607,301 - AMB_RS21210 0.33 -2.8
4,607,301 - AMB_RS21210 0.33 -3.0
4,607,301 - AMB_RS21210 0.33 -1.2
4,607,456 + AMB_RS21210 0.53 -1.2
4,607,475 + AMB_RS21210 0.55 -3.7
4,607,475 + AMB_RS21210 0.55 -2.7
4,607,476 - AMB_RS21210 0.55 -0.8
4,607,476 - AMB_RS21210 0.55 -1.1
4,607,476 - AMB_RS21210 0.55 -0.8
4,607,476 - AMB_RS21210 0.55 -1.5
4,607,476 - AMB_RS21210 0.55 -0.5
4,607,664 + AMB_RS21210 0.80 -2.5
4,607,768 + -2.1
4,607,768 + -3.3
4,607,774 + -2.9
4,607,774 + -0.9
4,607,774 + +0.2
4,607,774 + -3.5
4,607,774 + -1.9
4,607,774 + +0.2
4,607,774 + -3.8
4,607,775 - -1.7
4,607,775 - -2.1
4,607,775 - -2.6
4,607,775 - -1.1
4,607,789 - -1.5
4,607,851 + +2.4
4,607,851 + +0.2
4,607,851 + -0.7
4,607,852 - -0.3
4,607,852 - -1.0
4,608,040 + AMB_RS21215 0.17 -0.6
4,608,041 - AMB_RS21215 0.17 -1.8
4,608,041 - AMB_RS21215 0.17 -2.1
4,608,041 - AMB_RS21215 0.17 +0.2
4,608,057 + AMB_RS21215 0.20 -4.4
4,608,057 + AMB_RS21215 0.20 -1.0
4,608,058 - AMB_RS21215 0.20 +0.3
4,608,058 - AMB_RS21215 0.20 -0.2
4,608,058 - AMB_RS21215 0.20 -1.0
4,608,058 - AMB_RS21215 0.20 -1.8
4,608,058 - AMB_RS21215 0.20 -0.8
4,608,369 + AMB_RS21215 0.62 +0.8
4,608,369 + AMB_RS21215 0.62 -1.0
4,608,369 + AMB_RS21215 0.62 -2.5
4,608,370 - AMB_RS21215 0.62 +0.4
4,608,370 - AMB_RS21215 0.62 -1.8
4,608,370 - AMB_RS21215 0.62 -0.8
4,608,370 - AMB_RS21215 0.62 -1.0
4,608,370 - AMB_RS21215 0.62 -1.5
4,608,561 + AMB_RS21215 0.88 -1.4
4,608,561 + AMB_RS21215 0.88 -0.8
4,608,562 - AMB_RS21215 0.88 -2.0
4,608,562 - AMB_RS21215 0.88 -1.9
4,608,606 + -1.7
4,608,645 + +0.2
4,608,646 - -1.3
4,608,646 - -1.2
4,608,646 - -1.2
4,608,653 + +0.3
4,608,653 + +0.1
4,608,653 + +0.2
4,608,653 + +0.8
4,608,653 + -2.2
4,608,654 - +0.8
4,608,654 - +0.0
4,608,654 - +0.1
4,608,657 - +0.2
4,608,722 - -0.7
4,608,722 - -0.7
4,608,811 + AMB_RS21220 0.14 -0.0
4,608,814 + AMB_RS21220 0.14 +0.2
4,608,815 - AMB_RS21220 0.14 -0.5
4,608,815 - AMB_RS21220 0.14 -0.8
4,608,901 + AMB_RS21220 0.27 -0.4
4,608,901 + AMB_RS21220 0.27 -1.4
4,608,901 + AMB_RS21220 0.27 +1.8
4,608,901 + AMB_RS21220 0.27 +1.8
4,608,901 + AMB_RS21220 0.27 -0.2
4,608,901 + AMB_RS21220 0.27 -1.5
4,608,901 + AMB_RS21220 0.27 -1.2
4,608,901 + AMB_RS21220 0.27 -2.3
4,608,901 + AMB_RS21220 0.27 +1.4
4,608,902 - AMB_RS21220 0.27 -3.0
4,608,902 - AMB_RS21220 0.27 -1.8
4,608,902 - AMB_RS21220 0.27 -0.6
4,608,902 - AMB_RS21220 0.27 -1.5
4,608,902 - AMB_RS21220 0.27 -0.5
4,608,902 - AMB_RS21220 0.27 -0.5
4,608,902 - AMB_RS21220 0.27 -1.6
4,608,905 + AMB_RS21220 0.28 -0.5
4,608,906 - AMB_RS21220 0.28 -0.8
4,608,906 - AMB_RS21220 0.28 -0.1
4,608,906 - AMB_RS21220 0.28 -0.8
4,608,906 - AMB_RS21220 0.28 -0.2
4,609,039 + AMB_RS21220 0.48 -2.0
4,609,039 + AMB_RS21220 0.48 +0.8
4,609,039 + AMB_RS21220 0.48 +0.5
4,609,039 + AMB_RS21220 0.48 -1.4
4,609,039 + AMB_RS21220 0.48 -0.3
4,609,039 + AMB_RS21220 0.48 -1.0
4,609,040 - AMB_RS21220 0.48 +0.8
4,609,040 - AMB_RS21220 0.48 -1.1
4,609,040 - AMB_RS21220 0.48 -0.7
4,609,099 + AMB_RS21220 0.57 +0.7
4,609,100 - AMB_RS21220 0.57 +0.8
4,609,159 + AMB_RS21220 0.66 +0.8
4,609,160 - AMB_RS21220 0.66 +0.9
4,609,480 + +4.3
4,609,480 + -1.0
4,609,625 - AMB_RS21225 0.23 -0.9

Or see this region's nucleotide sequence