Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20875 and AMB_RS20880 are separated by 162 nucleotides AMB_RS20880 and AMB_RS20885 are separated by 103 nucleotides AMB_RS20885 and AMB_RS20890 overlap by 11 nucleotides
AMB_RS20875: AMB_RS20875 - L-lactate permease, at 4,532,125 to 4,533,768
_RS20875
AMB_RS20880: AMB_RS20880 - FCD domain-containing protein, at 4,533,931 to 4,534,554
_RS20880
AMB_RS20885: AMB_RS20885 - (Fe-S)-binding protein, at 4,534,658 to 4,535,407
_RS20885
AMB_RS20890: AMB_RS20890 - iron-sulfur cluster-binding protein, at 4,535,397 to 4,536,833
_RS20890
Position (kb) 4534
4535
4536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4533.746 kb on + strand at 4533.746 kb on + strand at 4533.746 kb on + strand at 4533.901 kb on + strand at 4533.966 kb on + strand at 4533.966 kb on + strand at 4533.966 kb on + strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4533.967 kb on - strand at 4534.246 kb on + strand, within AMB_RS20880 at 4534.246 kb on + strand, within AMB_RS20880 at 4534.246 kb on + strand, within AMB_RS20880 at 4534.246 kb on + strand, within AMB_RS20880 at 4534.247 kb on - strand, within AMB_RS20880 at 4534.321 kb on + strand, within AMB_RS20880 at 4534.321 kb on + strand, within AMB_RS20880 at 4534.321 kb on + strand, within AMB_RS20880 at 4534.322 kb on - strand, within AMB_RS20880 at 4534.449 kb on + strand, within AMB_RS20880 at 4534.449 kb on + strand, within AMB_RS20880 at 4534.449 kb on + strand, within AMB_RS20880 at 4534.450 kb on - strand, within AMB_RS20880 at 4534.450 kb on - strand, within AMB_RS20880 at 4534.450 kb on - strand, within AMB_RS20880 at 4534.688 kb on + strand at 4534.688 kb on + strand at 4534.688 kb on + strand at 4534.689 kb on - strand at 4534.689 kb on - strand at 4534.722 kb on - strand at 4534.938 kb on - strand, within AMB_RS20885 at 4535.001 kb on - strand, within AMB_RS20885 at 4535.001 kb on - strand, within AMB_RS20885 at 4535.001 kb on - strand, within AMB_RS20885 at 4535.817 kb on + strand, within AMB_RS20890 at 4535.817 kb on + strand, within AMB_RS20890 at 4535.817 kb on + strand, within AMB_RS20890 at 4535.817 kb on + strand, within AMB_RS20890 at 4535.817 kb on + strand, within AMB_RS20890 at 4535.818 kb on - strand, within AMB_RS20890 at 4535.818 kb on - strand, within AMB_RS20890 at 4535.818 kb on - strand, within AMB_RS20890 at 4535.852 kb on + strand, within AMB_RS20890 at 4535.929 kb on - strand, within AMB_RS20890 at 4535.929 kb on - strand, within AMB_RS20890 at 4535.931 kb on - strand, within AMB_RS20890 at 4536.207 kb on + strand, within AMB_RS20890 at 4536.207 kb on + strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.377 kb on + strand, within AMB_RS20890 at 4536.377 kb on + strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 4,533,746 + -0.5 4,533,746 + -0.9 4,533,746 + -0.4 4,533,901 + -1.9 4,533,966 + -0.8 4,533,966 + -0.9 4,533,966 + -1.0 4,533,967 - +1.8 4,533,967 - -0.5 4,533,967 - -0.2 4,533,967 - -2.3 4,533,967 - -0.5 4,533,967 - -0.5 4,533,967 - +0.2 4,534,246 + AMB_RS20880 0.50 -1.0 4,534,246 + AMB_RS20880 0.50 +0.8 4,534,246 + AMB_RS20880 0.50 +0.2 4,534,246 + AMB_RS20880 0.50 -1.0 4,534,247 - AMB_RS20880 0.51 -0.2 4,534,321 + AMB_RS20880 0.62 -0.3 4,534,321 + AMB_RS20880 0.62 -1.3 4,534,321 + AMB_RS20880 0.62 -3.5 4,534,322 - AMB_RS20880 0.63 -1.8 4,534,449 + AMB_RS20880 0.83 -0.5 4,534,449 + AMB_RS20880 0.83 -1.1 4,534,449 + AMB_RS20880 0.83 -1.9 4,534,450 - AMB_RS20880 0.83 -1.2 4,534,450 - AMB_RS20880 0.83 +0.8 4,534,450 - AMB_RS20880 0.83 +0.8 4,534,688 + -0.2 4,534,688 + +0.9 4,534,688 + +0.2 4,534,689 - -0.4 4,534,689 - +0.1 4,534,722 - -0.2 4,534,938 - AMB_RS20885 0.37 +0.3 4,535,001 - AMB_RS20885 0.46 +1.8 4,535,001 - AMB_RS20885 0.46 -2.5 4,535,001 - AMB_RS20885 0.46 -0.5 4,535,817 + AMB_RS20890 0.29 -0.5 4,535,817 + AMB_RS20890 0.29 -2.0 4,535,817 + AMB_RS20890 0.29 -0.4 4,535,817 + AMB_RS20890 0.29 -1.5 4,535,817 + AMB_RS20890 0.29 -0.2 4,535,818 - AMB_RS20890 0.29 -0.5 4,535,818 - AMB_RS20890 0.29 -1.3 4,535,818 - AMB_RS20890 0.29 -0.2 4,535,852 + AMB_RS20890 0.32 -1.5 4,535,929 - AMB_RS20890 0.37 -0.1 4,535,929 - AMB_RS20890 0.37 -0.4 4,535,931 - AMB_RS20890 0.37 -2.0 4,536,207 + AMB_RS20890 0.56 +0.3 4,536,207 + AMB_RS20890 0.56 +0.2 4,536,208 - AMB_RS20890 0.56 -1.5 4,536,208 - AMB_RS20890 0.56 +0.5 4,536,208 - AMB_RS20890 0.56 +1.8 4,536,375 + AMB_RS20890 0.68 +0.0 4,536,375 + AMB_RS20890 0.68 +0.2 4,536,375 + AMB_RS20890 0.68 +0.4 4,536,376 - AMB_RS20890 0.68 -2.4 4,536,376 - AMB_RS20890 0.68 -0.8 4,536,376 - AMB_RS20890 0.68 -0.1 4,536,376 - AMB_RS20890 0.68 -2.0 4,536,377 + AMB_RS20890 0.68 -1.7 4,536,377 + AMB_RS20890 0.68 +0.7 4,536,378 - AMB_RS20890 0.68 +0.8 4,536,378 - AMB_RS20890 0.68 -1.7 4,536,378 - AMB_RS20890 0.68 +0.8 4,536,399 + AMB_RS20890 0.70 -1.7 4,536,399 + AMB_RS20890 0.70 -1.8 4,536,399 + AMB_RS20890 0.70 -0.2 4,536,399 + AMB_RS20890 0.70 -0.1 4,536,399 + AMB_RS20890 0.70 +0.0 4,536,399 + AMB_RS20890 0.70 -2.1 4,536,399 + AMB_RS20890 0.70 -0.3 4,536,399 + AMB_RS20890 0.70 -1.4 4,536,400 - AMB_RS20890 0.70 -0.1 4,536,400 - AMB_RS20890 0.70 -0.5 4,536,400 - AMB_RS20890 0.70 -0.2 4,536,400 - AMB_RS20890 0.70 -1.4
Or see this region's nucleotide sequence