Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20470

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20460 and AMB_RS20465 are separated by 180 nucleotidesAMB_RS20465 and AMB_RS20470 overlap by 4 nucleotidesAMB_RS20470 and AMB_RS23635 are separated by 2 nucleotidesAMB_RS23635 and AMB_RS20480 are separated by 28 nucleotidesAMB_RS20480 and AMB_RS20485 overlap by 14 nucleotides AMB_RS20460: AMB_RS20460 - hypothetical protein, at 4,447,203 to 4,447,469 _RS20460 AMB_RS20465: AMB_RS20465 - hypothetical protein, at 4,447,650 to 4,448,309 _RS20465 AMB_RS20470: AMB_RS20470 - hypothetical protein, at 4,448,306 to 4,449,235 _RS20470 AMB_RS23635: AMB_RS23635 - hypothetical protein, at 4,449,238 to 4,449,720 _RS23635 AMB_RS20480: AMB_RS20480 - hypothetical protein, at 4,449,749 to 4,450,054 _RS20480 AMB_RS20485: AMB_RS20485 - hypothetical protein, at 4,450,041 to 4,450,238 _RS20485 Position (kb) 4448 4449 4450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4447.496 kb on - strandat 4447.557 kb on + strandat 4447.558 kb on - strandat 4447.558 kb on - strandat 4447.704 kb on + strandat 4447.705 kb on - strandat 4447.776 kb on + strand, within AMB_RS20465at 4447.776 kb on + strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.777 kb on - strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.976 kb on + strand, within AMB_RS20465at 4447.977 kb on - strand, within AMB_RS20465at 4447.977 kb on - strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.001 kb on + strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.002 kb on - strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.136 kb on + strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.137 kb on - strand, within AMB_RS20465at 4448.301 kb on + strandat 4448.301 kb on + strandat 4448.302 kb on - strandat 4448.302 kb on - strandat 4448.302 kb on - strandat 4448.302 kb on - strandat 4448.611 kb on + strand, within AMB_RS20470at 4448.639 kb on + strand, within AMB_RS20470at 4448.639 kb on + strand, within AMB_RS20470at 4448.639 kb on + strand, within AMB_RS20470at 4448.639 kb on + strand, within AMB_RS20470at 4448.640 kb on - strand, within AMB_RS20470at 4448.640 kb on - strand, within AMB_RS20470at 4449.008 kb on + strand, within AMB_RS20470at 4449.008 kb on + strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.009 kb on - strand, within AMB_RS20470at 4449.041 kb on + strand, within AMB_RS20470at 4449.041 kb on + strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.042 kb on - strand, within AMB_RS20470at 4449.062 kb on + strand, within AMB_RS20470at 4449.062 kb on + strand, within AMB_RS20470at 4449.063 kb on - strand, within AMB_RS20470at 4449.063 kb on - strand, within AMB_RS20470at 4449.318 kb on + strand, within AMB_RS23635at 4449.343 kb on + strand, within AMB_RS23635at 4449.344 kb on - strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.469 kb on + strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.470 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.483 kb on - strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.541 kb on + strand, within AMB_RS23635at 4449.622 kb on + strand, within AMB_RS23635at 4449.623 kb on - strand, within AMB_RS23635at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.794 kb on + strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.795 kb on - strand, within AMB_RS20480at 4449.857 kb on + strand, within AMB_RS20480at 4449.858 kb on - strand, within AMB_RS20480at 4449.914 kb on + strand, within AMB_RS20480

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,447,496 - -2.0
4,447,557 + -1.0
4,447,558 - +0.3
4,447,558 - -0.8
4,447,704 + -0.3
4,447,705 - -0.2
4,447,776 + AMB_RS20465 0.19 -1.4
4,447,776 + AMB_RS20465 0.19 +0.5
4,447,777 - AMB_RS20465 0.19 -1.2
4,447,777 - AMB_RS20465 0.19 -0.3
4,447,777 - AMB_RS20465 0.19 -0.0
4,447,777 - AMB_RS20465 0.19 +0.2
4,447,976 + AMB_RS20465 0.49 -1.4
4,447,976 + AMB_RS20465 0.49 -0.4
4,447,976 + AMB_RS20465 0.49 +0.6
4,447,976 + AMB_RS20465 0.49 -2.0
4,447,976 + AMB_RS20465 0.49 -0.2
4,447,977 - AMB_RS20465 0.50 -2.6
4,447,977 - AMB_RS20465 0.50 -0.8
4,448,001 + AMB_RS20465 0.53 +0.0
4,448,001 + AMB_RS20465 0.53 +0.5
4,448,001 + AMB_RS20465 0.53 -0.2
4,448,001 + AMB_RS20465 0.53 -0.3
4,448,001 + AMB_RS20465 0.53 -1.2
4,448,001 + AMB_RS20465 0.53 -0.1
4,448,001 + AMB_RS20465 0.53 -0.4
4,448,002 - AMB_RS20465 0.53 -0.8
4,448,002 - AMB_RS20465 0.53 -0.1
4,448,002 - AMB_RS20465 0.53 +0.4
4,448,002 - AMB_RS20465 0.53 +0.8
4,448,002 - AMB_RS20465 0.53 -0.7
4,448,002 - AMB_RS20465 0.53 -0.2
4,448,002 - AMB_RS20465 0.53 -0.6
4,448,002 - AMB_RS20465 0.53 -0.0
4,448,136 + AMB_RS20465 0.74 +2.0
4,448,136 + AMB_RS20465 0.74 +0.2
4,448,136 + AMB_RS20465 0.74 -0.4
4,448,136 + AMB_RS20465 0.74 +0.6
4,448,137 - AMB_RS20465 0.74 -0.5
4,448,137 - AMB_RS20465 0.74 +0.3
4,448,137 - AMB_RS20465 0.74 +1.9
4,448,137 - AMB_RS20465 0.74 -1.4
4,448,137 - AMB_RS20465 0.74 -0.2
4,448,137 - AMB_RS20465 0.74 -0.6
4,448,137 - AMB_RS20465 0.74 +0.2
4,448,137 - AMB_RS20465 0.74 -0.4
4,448,301 + -0.2
4,448,301 + -1.2
4,448,302 - +0.1
4,448,302 - -1.0
4,448,302 - +0.2
4,448,302 - +0.8
4,448,611 + AMB_RS20470 0.33 -0.1
4,448,639 + AMB_RS20470 0.36 +0.2
4,448,639 + AMB_RS20470 0.36 -3.7
4,448,639 + AMB_RS20470 0.36 -0.2
4,448,639 + AMB_RS20470 0.36 +0.2
4,448,640 - AMB_RS20470 0.36 -0.6
4,448,640 - AMB_RS20470 0.36 -0.6
4,449,008 + AMB_RS20470 0.75 -1.7
4,449,008 + AMB_RS20470 0.75 -1.0
4,449,009 - AMB_RS20470 0.76 -0.2
4,449,009 - AMB_RS20470 0.76 -1.9
4,449,009 - AMB_RS20470 0.76 -1.7
4,449,041 + AMB_RS20470 0.79 +1.8
4,449,041 + AMB_RS20470 0.79 -0.8
4,449,042 - AMB_RS20470 0.79 -2.8
4,449,042 - AMB_RS20470 0.79 -1.1
4,449,042 - AMB_RS20470 0.79 -1.9
4,449,042 - AMB_RS20470 0.79 +1.5
4,449,062 + AMB_RS20470 0.81 -2.1
4,449,062 + AMB_RS20470 0.81 -0.2
4,449,063 - AMB_RS20470 0.81 +0.3
4,449,063 - AMB_RS20470 0.81 -0.6
4,449,318 + AMB_RS23635 0.17 -0.0
4,449,343 + AMB_RS23635 0.22 -2.6
4,449,344 - AMB_RS23635 0.22 -1.0
4,449,469 + AMB_RS23635 0.48 -0.8
4,449,469 + AMB_RS23635 0.48 -2.0
4,449,469 + AMB_RS23635 0.48 -0.2
4,449,470 - AMB_RS23635 0.48 +1.8
4,449,470 - AMB_RS23635 0.48 -0.2
4,449,470 - AMB_RS23635 0.48 +0.5
4,449,483 - AMB_RS23635 0.51 -0.0
4,449,483 - AMB_RS23635 0.51 +1.8
4,449,483 - AMB_RS23635 0.51 -2.5
4,449,541 + AMB_RS23635 0.63 +0.2
4,449,541 + AMB_RS23635 0.63 -1.7
4,449,541 + AMB_RS23635 0.63 -3.9
4,449,541 + AMB_RS23635 0.63 -0.1
4,449,541 + AMB_RS23635 0.63 +0.2
4,449,541 + AMB_RS23635 0.63 +0.2
4,449,622 + AMB_RS23635 0.80 -0.8
4,449,623 - AMB_RS23635 0.80 -0.8
4,449,794 + AMB_RS20480 0.15 +0.2
4,449,794 + AMB_RS20480 0.15 -0.8
4,449,794 + AMB_RS20480 0.15 +0.3
4,449,794 + AMB_RS20480 0.15 -3.9
4,449,795 - AMB_RS20480 0.15 -0.2
4,449,795 - AMB_RS20480 0.15 -3.0
4,449,795 - AMB_RS20480 0.15 -0.4
4,449,795 - AMB_RS20480 0.15 -0.6
4,449,857 + AMB_RS20480 0.35 -2.4
4,449,858 - AMB_RS20480 0.36 -0.5
4,449,914 + AMB_RS20480 0.54 -0.6

Or see this region's nucleotide sequence