Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20240

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20235 and AMB_RS20240 overlap by 4 nucleotidesAMB_RS20240 and AMB_RS20245 are separated by 30 nucleotides AMB_RS20235: AMB_RS20235 - HlyD family secretion protein, at 4,407,113 to 4,408,144 _RS20235 AMB_RS20240: AMB_RS20240 - MFS transporter, at 4,408,141 to 4,409,709 _RS20240 AMB_RS20245: AMB_RS20245 - sensor domain-containing diguanylate cyclase, at 4,409,740 to 4,410,813 _RS20245 Position (kb) 4408 4409 4410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4407.224 kb on + strand, within AMB_RS20235at 4407.224 kb on + strand, within AMB_RS20235at 4407.224 kb on + strand, within AMB_RS20235at 4407.224 kb on + strand, within AMB_RS20235at 4407.224 kb on + strand, within AMB_RS20235at 4407.224 kb on + strand, within AMB_RS20235at 4407.225 kb on - strand, within AMB_RS20235at 4407.225 kb on - strand, within AMB_RS20235at 4407.225 kb on - strand, within AMB_RS20235at 4407.506 kb on + strand, within AMB_RS20235at 4407.506 kb on + strand, within AMB_RS20235at 4407.539 kb on + strand, within AMB_RS20235at 4407.539 kb on + strand, within AMB_RS20235at 4407.539 kb on + strand, within AMB_RS20235at 4407.539 kb on + strand, within AMB_RS20235at 4407.539 kb on + strand, within AMB_RS20235at 4407.540 kb on - strand, within AMB_RS20235at 4407.540 kb on - strand, within AMB_RS20235at 4407.670 kb on - strand, within AMB_RS20235at 4407.794 kb on + strand, within AMB_RS20235at 4407.794 kb on + strand, within AMB_RS20235at 4407.795 kb on - strand, within AMB_RS20235at 4407.795 kb on - strand, within AMB_RS20235at 4408.327 kb on + strand, within AMB_RS20240at 4408.327 kb on + strand, within AMB_RS20240at 4408.328 kb on - strand, within AMB_RS20240at 4408.328 kb on - strand, within AMB_RS20240at 4408.328 kb on - strand, within AMB_RS20240at 4408.328 kb on - strand, within AMB_RS20240at 4408.394 kb on - strand, within AMB_RS20240at 4408.417 kb on - strand, within AMB_RS20240at 4408.537 kb on + strand, within AMB_RS20240at 4408.537 kb on + strand, within AMB_RS20240at 4408.537 kb on + strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.538 kb on - strand, within AMB_RS20240at 4408.711 kb on + strand, within AMB_RS20240at 4408.712 kb on - strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.810 kb on + strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.811 kb on - strand, within AMB_RS20240at 4408.985 kb on - strand, within AMB_RS20240at 4409.009 kb on + strand, within AMB_RS20240at 4409.009 kb on + strand, within AMB_RS20240at 4409.010 kb on - strand, within AMB_RS20240at 4409.010 kb on - strand, within AMB_RS20240at 4409.012 kb on - strand, within AMB_RS20240at 4409.023 kb on + strand, within AMB_RS20240at 4409.023 kb on + strand, within AMB_RS20240at 4409.023 kb on + strand, within AMB_RS20240at 4409.024 kb on - strand, within AMB_RS20240at 4409.024 kb on - strand, within AMB_RS20240at 4409.024 kb on - strand, within AMB_RS20240at 4409.024 kb on - strand, within AMB_RS20240at 4409.039 kb on - strand, within AMB_RS20240at 4409.161 kb on + strand, within AMB_RS20240at 4409.161 kb on + strand, within AMB_RS20240at 4409.161 kb on + strand, within AMB_RS20240at 4409.161 kb on + strand, within AMB_RS20240at 4409.162 kb on - strand, within AMB_RS20240at 4409.162 kb on - strand, within AMB_RS20240at 4409.236 kb on + strand, within AMB_RS20240at 4409.236 kb on + strand, within AMB_RS20240at 4409.237 kb on - strand, within AMB_RS20240at 4409.237 kb on - strand, within AMB_RS20240at 4409.359 kb on + strand, within AMB_RS20240at 4409.707 kb on + strandat 4409.707 kb on + strandat 4409.708 kb on - strandat 4409.726 kb on - strandat 4409.815 kb on - strandat 4409.815 kb on - strandat 4409.845 kb on - strandat 4410.013 kb on + strand, within AMB_RS20245at 4410.014 kb on - strand, within AMB_RS20245at 4410.014 kb on - strand, within AMB_RS20245at 4410.014 kb on - strand, within AMB_RS20245at 4410.014 kb on - strand, within AMB_RS20245at 4410.082 kb on + strand, within AMB_RS20245at 4410.082 kb on + strand, within AMB_RS20245at 4410.083 kb on - strand, within AMB_RS20245at 4410.083 kb on - strand, within AMB_RS20245at 4410.083 kb on - strand, within AMB_RS20245at 4410.083 kb on - strand, within AMB_RS20245at 4410.169 kb on + strand, within AMB_RS20245at 4410.169 kb on + strand, within AMB_RS20245at 4410.170 kb on - strand, within AMB_RS20245at 4410.421 kb on + strand, within AMB_RS20245at 4410.422 kb on - strand, within AMB_RS20245at 4410.422 kb on - strand, within AMB_RS20245at 4410.422 kb on - strand, within AMB_RS20245at 4410.433 kb on + strand, within AMB_RS20245at 4410.433 kb on + strand, within AMB_RS20245at 4410.433 kb on + strand, within AMB_RS20245at 4410.434 kb on - strand, within AMB_RS20245at 4410.434 kb on - strand, within AMB_RS20245at 4410.434 kb on - strand, within AMB_RS20245

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,407,224 + AMB_RS20235 0.11 -2.3
4,407,224 + AMB_RS20235 0.11 +0.2
4,407,224 + AMB_RS20235 0.11 -0.5
4,407,224 + AMB_RS20235 0.11 -0.2
4,407,224 + AMB_RS20235 0.11 -0.5
4,407,224 + AMB_RS20235 0.11 -0.6
4,407,225 - AMB_RS20235 0.11 +0.2
4,407,225 - AMB_RS20235 0.11 +1.6
4,407,225 - AMB_RS20235 0.11 -1.8
4,407,506 + AMB_RS20235 0.38 +0.8
4,407,506 + AMB_RS20235 0.38 -0.8
4,407,539 + AMB_RS20235 0.41 -1.6
4,407,539 + AMB_RS20235 0.41 -2.2
4,407,539 + AMB_RS20235 0.41 -4.4
4,407,539 + AMB_RS20235 0.41 -0.4
4,407,539 + AMB_RS20235 0.41 +4.7
4,407,540 - AMB_RS20235 0.41 +0.8
4,407,540 - AMB_RS20235 0.41 -0.2
4,407,670 - AMB_RS20235 0.54 +0.0
4,407,794 + AMB_RS20235 0.66 -0.1
4,407,794 + AMB_RS20235 0.66 -1.1
4,407,795 - AMB_RS20235 0.66 +0.0
4,407,795 - AMB_RS20235 0.66 -2.2
4,408,327 + AMB_RS20240 0.12 -0.5
4,408,327 + AMB_RS20240 0.12 +1.1
4,408,328 - AMB_RS20240 0.12 -1.6
4,408,328 - AMB_RS20240 0.12 +1.8
4,408,328 - AMB_RS20240 0.12 -1.9
4,408,328 - AMB_RS20240 0.12 -2.9
4,408,394 - AMB_RS20240 0.16 -1.8
4,408,417 - AMB_RS20240 0.18 -0.8
4,408,537 + AMB_RS20240 0.25 -1.6
4,408,537 + AMB_RS20240 0.25 -0.6
4,408,537 + AMB_RS20240 0.25 -2.4
4,408,538 - AMB_RS20240 0.25 +0.3
4,408,538 - AMB_RS20240 0.25 +0.7
4,408,538 - AMB_RS20240 0.25 -0.1
4,408,538 - AMB_RS20240 0.25 -1.2
4,408,538 - AMB_RS20240 0.25 +1.8
4,408,538 - AMB_RS20240 0.25 -0.2
4,408,711 + AMB_RS20240 0.36 -0.6
4,408,712 - AMB_RS20240 0.36 -1.6
4,408,810 + AMB_RS20240 0.43 -0.6
4,408,810 + AMB_RS20240 0.43 -0.2
4,408,810 + AMB_RS20240 0.43 -0.4
4,408,810 + AMB_RS20240 0.43 -3.4
4,408,810 + AMB_RS20240 0.43 -3.4
4,408,810 + AMB_RS20240 0.43 -0.2
4,408,810 + AMB_RS20240 0.43 -1.6
4,408,811 - AMB_RS20240 0.43 -1.9
4,408,811 - AMB_RS20240 0.43 -0.2
4,408,811 - AMB_RS20240 0.43 +0.5
4,408,811 - AMB_RS20240 0.43 -1.8
4,408,811 - AMB_RS20240 0.43 -0.2
4,408,811 - AMB_RS20240 0.43 +0.9
4,408,811 - AMB_RS20240 0.43 -1.8
4,408,985 - AMB_RS20240 0.54 -0.5
4,409,009 + AMB_RS20240 0.55 -1.2
4,409,009 + AMB_RS20240 0.55 -2.8
4,409,010 - AMB_RS20240 0.55 -2.3
4,409,010 - AMB_RS20240 0.55 +0.2
4,409,012 - AMB_RS20240 0.56 -1.6
4,409,023 + AMB_RS20240 0.56 +1.8
4,409,023 + AMB_RS20240 0.56 +1.0
4,409,023 + AMB_RS20240 0.56 +0.2
4,409,024 - AMB_RS20240 0.56 +0.3
4,409,024 - AMB_RS20240 0.56 +1.1
4,409,024 - AMB_RS20240 0.56 -0.8
4,409,024 - AMB_RS20240 0.56 -3.1
4,409,039 - AMB_RS20240 0.57 +1.8
4,409,161 + AMB_RS20240 0.65 +0.2
4,409,161 + AMB_RS20240 0.65 -1.4
4,409,161 + AMB_RS20240 0.65 -2.4
4,409,161 + AMB_RS20240 0.65 +0.6
4,409,162 - AMB_RS20240 0.65 -0.6
4,409,162 - AMB_RS20240 0.65 +1.1
4,409,236 + AMB_RS20240 0.70 -0.7
4,409,236 + AMB_RS20240 0.70 +1.4
4,409,237 - AMB_RS20240 0.70 +0.1
4,409,237 - AMB_RS20240 0.70 +0.0
4,409,359 + AMB_RS20240 0.78 +0.5
4,409,707 + -2.6
4,409,707 + +4.1
4,409,708 - -0.9
4,409,726 - -0.3
4,409,815 - +1.7
4,409,815 - -0.1
4,409,845 - -0.0
4,410,013 + AMB_RS20245 0.25 -0.6
4,410,014 - AMB_RS20245 0.26 -0.6
4,410,014 - AMB_RS20245 0.26 -1.3
4,410,014 - AMB_RS20245 0.26 -1.1
4,410,014 - AMB_RS20245 0.26 -0.5
4,410,082 + AMB_RS20245 0.32 +0.2
4,410,082 + AMB_RS20245 0.32 +0.1
4,410,083 - AMB_RS20245 0.32 -0.6
4,410,083 - AMB_RS20245 0.32 -0.6
4,410,083 - AMB_RS20245 0.32 +0.1
4,410,083 - AMB_RS20245 0.32 -1.5
4,410,169 + AMB_RS20245 0.40 -0.6
4,410,169 + AMB_RS20245 0.40 -2.3
4,410,170 - AMB_RS20245 0.40 -2.5
4,410,421 + AMB_RS20245 0.63 -0.6
4,410,422 - AMB_RS20245 0.64 +0.2
4,410,422 - AMB_RS20245 0.64 -0.6
4,410,422 - AMB_RS20245 0.64 -1.8
4,410,433 + AMB_RS20245 0.65 -0.6
4,410,433 + AMB_RS20245 0.65 -0.4
4,410,433 + AMB_RS20245 0.65 -3.1
4,410,434 - AMB_RS20245 0.65 -1.1
4,410,434 - AMB_RS20245 0.65 -1.1
4,410,434 - AMB_RS20245 0.65 +0.6

Or see this region's nucleotide sequence