Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19690

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19685 and AMB_RS19690 overlap by 4 nucleotidesAMB_RS19690 and AMB_RS19695 are separated by 10 nucleotides AMB_RS19685: AMB_RS19685 - quinone-dependent dihydroorotate dehydrogenase, at 4,299,200 to 4,300,267 _RS19685 AMB_RS19690: AMB_RS19690 - TIGR01459 family HAD-type hydrolase, at 4,300,264 to 4,301,130 _RS19690 AMB_RS19695: AMB_RS19695 - ferredoxin--NADP(+) reductase, at 4,301,141 to 4,302,154 _RS19695 Position (kb) 4300 4301 4302Strain fitness (log2 ratio) -2 -1 0 1 2at 4300.502 kb on + strand, within AMB_RS19690at 4300.502 kb on + strand, within AMB_RS19690at 4300.502 kb on + strand, within AMB_RS19690at 4300.568 kb on + strand, within AMB_RS19690at 4300.582 kb on + strand, within AMB_RS19690at 4300.582 kb on + strand, within AMB_RS19690at 4300.882 kb on + strand, within AMB_RS19690at 4301.128 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,300,502 + AMB_RS19690 0.27 -1.8
4,300,502 + AMB_RS19690 0.27 +1.8
4,300,502 + AMB_RS19690 0.27 -0.2
4,300,568 + AMB_RS19690 0.35 -0.5
4,300,582 + AMB_RS19690 0.37 +0.8
4,300,582 + AMB_RS19690 0.37 -0.6
4,300,882 + AMB_RS19690 0.71 +0.1
4,301,128 + -0.3

Or see this region's nucleotide sequence