Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19550

Experiment: 150_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19545 and AMB_RS19550 are separated by 21 nucleotidesAMB_RS19550 and AMB_RS23795 are separated by 136 nucleotides AMB_RS19545: AMB_RS19545 - elongation factor 4, at 4,266,840 to 4,268,642 _RS19545 AMB_RS19550: AMB_RS19550 - DUF58 domain-containing protein, at 4,268,664 to 4,269,554 _RS19550 AMB_RS23795: AMB_RS23795 - hypothetical protein, at 4,269,691 to 4,272,383 _RS23795 Position (kb) 4268 4269 4270Strain fitness (log2 ratio) -2 -1 0 1at 4268.088 kb on + strand, within AMB_RS19545at 4268.176 kb on - strand, within AMB_RS19545at 4268.272 kb on - strand, within AMB_RS19545at 4268.910 kb on + strand, within AMB_RS19550at 4268.910 kb on + strand, within AMB_RS19550at 4268.911 kb on - strand, within AMB_RS19550at 4268.911 kb on - strand, within AMB_RS19550at 4269.330 kb on + strand, within AMB_RS19550at 4269.411 kb on + strand, within AMB_RS19550at 4269.411 kb on + strand, within AMB_RS19550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
remove
4,268,088 + AMB_RS19545 0.69 -0.6
4,268,176 - AMB_RS19545 0.74 -0.3
4,268,272 - AMB_RS19545 0.79 -1.3
4,268,910 + AMB_RS19550 0.28 +0.7
4,268,910 + AMB_RS19550 0.28 +0.2
4,268,911 - AMB_RS19550 0.28 -1.6
4,268,911 - AMB_RS19550 0.28 +1.0
4,269,330 + AMB_RS19550 0.75 +0.1
4,269,411 + AMB_RS19550 0.84 +0.4
4,269,411 + AMB_RS19550 0.84 -2.5

Or see this region's nucleotide sequence