Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19380

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
4,227,623	+		AMB_RS19375	0.63	-0.4
4,227,624	-		AMB_RS19375	0.63	-1.1
4,227,944	+		AMB_RS19375	0.76	-1.3
4,227,944	+		AMB_RS19375	0.76	+0.7
4,227,944	+		AMB_RS19375	0.76	-1.4
4,227,944	+		AMB_RS19375	0.76	-0.6
4,227,944	+		AMB_RS19375	0.76	-0.1
4,227,945	-		AMB_RS19375	0.76	+0.1
4,227,945	-		AMB_RS19375	0.76	-1.9
4,228,196	+		AMB_RS19375	0.85	+0.1
4,228,196	+		AMB_RS19375	0.85	-2.2
4,228,196	+		AMB_RS19375	0.85	-1.5
4,228,196	+		AMB_RS19375	0.85	-0.4
4,228,197	-		AMB_RS19375	0.85	-1.7
4,228,197	-		AMB_RS19375	0.85	-0.6
4,228,197	-		AMB_RS19375	0.85	-0.1
4,228,197	-		AMB_RS19375	0.85	+0.1
4,228,217	+		AMB_RS19375	0.86	-2.2
4,228,218	-		AMB_RS19375	0.86	-2.2
4,228,218	-		AMB_RS19375	0.86	+3.9
4,228,319	+				-1.6
4,228,319	+				+0.1
4,228,319	+				-4.4
4,228,319	+				-2.8
4,228,319	+				+0.1
4,228,320	-				-0.1
4,228,320	-				+0.1
4,228,320	-				+0.1
4,228,320	-				+0.1
4,228,321	+				-1.2
4,228,321	+				-0.3
4,228,321	+				-0.0
4,228,322	-				-0.3
4,228,322	-				-0.3
4,228,322	-				-0.1
4,228,398	-				+0.6
4,228,477	+				-0.1
4,228,478	-				-1.3
4,228,478	-				-2.0
4,228,478	-				+0.1
4,228,478	-				-1.3
4,228,499	+				-0.3
4,228,499	+				-0.4
4,228,499	+				-0.0
4,228,499	+				+0.9
4,228,500	-				-0.3
4,228,500	-				-1.1
4,228,500	-				-0.6
4,228,500	-				-0.6
4,228,546	+				+0.7
4,228,547	-				-0.6
4,228,559	-				-0.9
4,228,568	+				-1.1
4,228,568	+				+0.9
4,228,568	+				-0.9
4,228,569	-				-0.6
4,228,569	-				+0.4
4,228,569	-				-0.6
4,228,700	+				+0.5
4,228,701	-				-0.3
4,228,985	+		AMB_RS19380	0.19	+0.3
4,228,985	+		AMB_RS19380	0.19	-2.0
4,228,985	+		AMB_RS19380	0.19	+0.5
4,228,985	+		AMB_RS19380	0.19	-0.7
4,228,985	+		AMB_RS19380	0.19	-1.9
4,229,063	+		AMB_RS19380	0.22	-0.5
4,229,063	+		AMB_RS19380	0.22	-4.1
4,229,063	+		AMB_RS19380	0.22	-2.2
4,229,064	-		AMB_RS19380	0.22	+0.9
4,229,064	-		AMB_RS19380	0.22	-1.0
4,229,064	-		AMB_RS19380	0.22	-1.9
4,229,064	-		AMB_RS19380	0.22	-0.2
4,229,064	-		AMB_RS19380	0.22	-0.5
4,229,064	-		AMB_RS19380	0.22	-1.1
4,229,064	-		AMB_RS19380	0.22	-0.3
4,229,064	-		AMB_RS19380	0.22	+0.7
4,229,064	-		AMB_RS19380	0.22	+0.9
4,229,064	-		AMB_RS19380	0.22	-0.2
4,229,064	-		AMB_RS19380	0.22	+1.2
4,229,064	-		AMB_RS19380	0.22	-1.7
4,229,210	+		AMB_RS19380	0.29	-0.9
4,229,210	+		AMB_RS19380	0.29	+0.7
4,229,210	+		AMB_RS19380	0.29	-1.3
4,229,211	-		AMB_RS19380	0.29	-0.6
4,229,211	-		AMB_RS19380	0.29	-0.4
4,229,211	-		AMB_RS19380	0.29	+1.1
4,229,351	+		AMB_RS19380	0.36	+0.7
4,229,351	+		AMB_RS19380	0.36	-1.6
4,229,351	+		AMB_RS19380	0.36	-1.1
4,229,351	+		AMB_RS19380	0.36	+1.4
4,229,351	+		AMB_RS19380	0.36	+0.2
4,229,352	-		AMB_RS19380	0.36	-0.6
4,229,352	-		AMB_RS19380	0.36	+1.0
4,229,352	-		AMB_RS19380	0.36	+0.4
4,229,352	-		AMB_RS19380	0.36	+0.4
4,229,352	-		AMB_RS19380	0.36	-0.6
4,229,528	+		AMB_RS19380	0.44	-1.6
4,229,529	-		AMB_RS19380	0.44	+0.4
4,229,588	+		AMB_RS19380	0.47	+0.6
4,229,588	+		AMB_RS19380	0.47	-1.3
4,229,588	+		AMB_RS19380	0.47	-0.1
4,229,588	+		AMB_RS19380	0.47	-1.3
4,229,588	+		AMB_RS19380	0.47	-0.3
4,229,590	-		AMB_RS19380	0.47	-0.3
4,229,822	-		AMB_RS19380	0.58	+4.4
4,229,822	-		AMB_RS19380	0.58	-1.3
4,230,137	+		AMB_RS19380	0.73	-1.9
4,230,137	+		AMB_RS19380	0.73	-0.4
4,230,138	-		AMB_RS19380	0.73	+1.6
4,230,164	+		AMB_RS19380	0.74	+0.1
4,230,164	+		AMB_RS19380	0.74	-2.4
4,230,164	+		AMB_RS19380	0.74	-0.2
4,230,164	+		AMB_RS19380	0.74	-0.3
4,230,164	+		AMB_RS19380	0.74	-1.9
4,230,239	+		AMB_RS19380	0.77	-0.7
4,230,239	+		AMB_RS19380	0.77	-2.9
4,230,239	+		AMB_RS19380	0.77	-1.3
4,230,239	+		AMB_RS19380	0.77	+0.0
4,230,240	-		AMB_RS19380	0.77	+0.7
4,230,305	+		AMB_RS19380	0.81	-0.7
4,230,305	+		AMB_RS19380	0.81	-0.8
4,230,305	+		AMB_RS19380	0.81	+0.2
4,230,305	+		AMB_RS19380	0.81	+0.4
4,230,306	-		AMB_RS19380	0.81	-1.6
4,230,306	-		AMB_RS19380	0.81	+0.1
4,230,306	-		AMB_RS19380	0.81	-1.2
4,230,306	-		AMB_RS19380	0.81	-0.3
4,230,306	-		AMB_RS19380	0.81	-2.0
4,230,306	-		AMB_RS19380	0.81	-1.6
4,230,422	+		AMB_RS19380	0.86	-1.6
4,230,422	+		AMB_RS19380	0.86	-0.1
4,230,422	+		AMB_RS19380	0.86	-2.5
4,230,422	+		AMB_RS19380	0.86	-1.7
4,230,423	-		AMB_RS19380	0.86	-0.2
4,230,423	-		AMB_RS19380	0.86	-3.5
4,230,423	-		AMB_RS19380	0.86	+0.3
4,230,423	-		AMB_RS19380	0.86	-2.4
4,230,668	+				+0.7
4,230,668	+				-0.9
4,230,668	+				+4.0
4,230,710	+				-1.7
4,230,710	+				+0.7
4,230,710	+				-1.5
4,230,711	-				-1.3
4,230,719	+				-1.1
4,231,266	+				-0.3
4,231,266	+				+0.1
4,231,266	+				-4.2
4,231,267	-				+1.4
4,231,267	-				-0.5
4,231,267	-				-1.1
4,231,267	-				-2.0
4,231,267	-				-1.7
4,231,292	+				-1.0
4,231,298	+				+0.1
4,231,298	+				+0.1
4,231,299	-				+0.1
4,231,304	+				-0.6
4,231,304	+				+0.9
4,231,348	-				-0.5
4,231,541	+		AMB_RS19390	0.39	-1.8
4,231,541	+		AMB_RS19390	0.39	-0.3
4,231,542	-		AMB_RS19390	0.39	-0.1
4,231,542	-		AMB_RS19390	0.39	+0.9
4,231,542	-		AMB_RS19390	0.39	-1.8
4,231,561	+		AMB_RS19390	0.42	-0.4
4,231,561	+		AMB_RS19390	0.42	-0.3
4,231,562	-		AMB_RS19390	0.42	-0.3
4,231,562	-		AMB_RS19390	0.42	-0.2
4,231,571	-		AMB_RS19390	0.44	-0.3
4,231,571	-		AMB_RS19390	0.44	-0.3
4,231,585	+		AMB_RS19390	0.46	-1.3
4,231,585	+		AMB_RS19390	0.46	-0.3
4,231,585	+		AMB_RS19390	0.46	-1.3
4,231,586	-		AMB_RS19390	0.46	-0.5
4,231,586	-		AMB_RS19390	0.46	-1.7
4,231,627	+		AMB_RS19390	0.53	+1.0
4,231,627	+		AMB_RS19390	0.53	-1.5