Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19370

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19360 and AMB_RS19365 overlap by 1 nucleotidesAMB_RS19365 and AMB_RS19370 are separated by 1 nucleotidesAMB_RS19370 and AMB_RS19375 are separated by 28 nucleotides AMB_RS19360: AMB_RS19360 - flagellar basal body P-ring protein, at 4,223,962 to 4,225,140 _RS19360 AMB_RS19365: AMB_RS19365 - chemotactic signal-response protein cheL, at 4,225,140 to 4,225,463 _RS19365 AMB_RS19370: AMB_RS19370 - flagellar protein FlgN, at 4,225,465 to 4,225,965 _RS19370 AMB_RS19375: AMB_RS19375 - flagellar hook-associated protein FlgK, at 4,225,994 to 4,228,570 _RS19375 Position (kb) 4225 4226Strain fitness (log2 ratio) -2 -1 0 1at 4224.515 kb on + strand, within AMB_RS19360at 4224.724 kb on + strand, within AMB_RS19360at 4225.174 kb on - strand, within AMB_RS19365at 4225.174 kb on - strand, within AMB_RS19365at 4225.174 kb on - strand, within AMB_RS19365at 4225.174 kb on - strand, within AMB_RS19365at 4225.374 kb on + strand, within AMB_RS19365at 4225.379 kb on + strand, within AMB_RS19365at 4225.379 kb on + strand, within AMB_RS19365at 4225.380 kb on - strand, within AMB_RS19365at 4225.380 kb on - strand, within AMB_RS19365at 4225.552 kb on + strand, within AMB_RS19370at 4225.681 kb on + strand, within AMB_RS19370at 4225.681 kb on + strand, within AMB_RS19370at 4225.681 kb on + strand, within AMB_RS19370at 4225.682 kb on - strand, within AMB_RS19370at 4225.682 kb on - strand, within AMB_RS19370at 4225.831 kb on + strand, within AMB_RS19370at 4225.831 kb on + strand, within AMB_RS19370at 4225.831 kb on + strand, within AMB_RS19370at 4225.831 kb on + strand, within AMB_RS19370at 4225.832 kb on - strand, within AMB_RS19370at 4225.832 kb on - strand, within AMB_RS19370at 4225.894 kb on + strand, within AMB_RS19370at 4225.974 kb on + strandat 4225.974 kb on + strandat 4225.974 kb on + strandat 4225.974 kb on + strandat 4225.975 kb on - strandat 4225.975 kb on - strandat 4226.099 kb on + strandat 4226.099 kb on + strandat 4226.099 kb on + strandat 4226.255 kb on + strand, within AMB_RS19375at 4226.255 kb on + strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.256 kb on - strand, within AMB_RS19375at 4226.258 kb on + strand, within AMB_RS19375at 4226.259 kb on - strand, within AMB_RS19375at 4226.440 kb on + strand, within AMB_RS19375at 4226.440 kb on + strand, within AMB_RS19375at 4226.441 kb on - strand, within AMB_RS19375at 4226.567 kb on - strand, within AMB_RS19375at 4226.618 kb on + strand, within AMB_RS19375at 4226.618 kb on + strand, within AMB_RS19375at 4226.618 kb on + strand, within AMB_RS19375at 4226.619 kb on - strand, within AMB_RS19375at 4226.619 kb on - strand, within AMB_RS19375at 4226.634 kb on - strand, within AMB_RS19375at 4226.634 kb on - strand, within AMB_RS19375

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,224,515 + AMB_RS19360 0.47 -0.6
4,224,724 + AMB_RS19360 0.65 -1.3
4,225,174 - AMB_RS19365 0.10 -0.0
4,225,174 - AMB_RS19365 0.10 +0.1
4,225,174 - AMB_RS19365 0.10 -0.4
4,225,174 - AMB_RS19365 0.10 -1.0
4,225,374 + AMB_RS19365 0.72 -0.2
4,225,379 + AMB_RS19365 0.74 -0.9
4,225,379 + AMB_RS19365 0.74 -1.3
4,225,380 - AMB_RS19365 0.74 -0.9
4,225,380 - AMB_RS19365 0.74 -0.9
4,225,552 + AMB_RS19370 0.17 +0.3
4,225,681 + AMB_RS19370 0.43 -0.6
4,225,681 + AMB_RS19370 0.43 +0.1
4,225,681 + AMB_RS19370 0.43 +0.2
4,225,682 - AMB_RS19370 0.43 +0.4
4,225,682 - AMB_RS19370 0.43 -1.8
4,225,831 + AMB_RS19370 0.73 -0.1
4,225,831 + AMB_RS19370 0.73 -0.8
4,225,831 + AMB_RS19370 0.73 -1.9
4,225,831 + AMB_RS19370 0.73 -0.6
4,225,832 - AMB_RS19370 0.73 -0.4
4,225,832 - AMB_RS19370 0.73 -1.3
4,225,894 + AMB_RS19370 0.86 +0.5
4,225,974 + -0.0
4,225,974 + +0.2
4,225,974 + -0.5
4,225,974 + +0.1
4,225,975 - +0.0
4,225,975 - -0.5
4,226,099 + -0.6
4,226,099 + +0.0
4,226,099 + -2.7
4,226,255 + AMB_RS19375 0.10 +0.6
4,226,255 + AMB_RS19375 0.10 +1.7
4,226,256 - AMB_RS19375 0.10 +1.7
4,226,256 - AMB_RS19375 0.10 -0.3
4,226,256 - AMB_RS19375 0.10 +1.7
4,226,256 - AMB_RS19375 0.10 -1.5
4,226,256 - AMB_RS19375 0.10 +0.1
4,226,256 - AMB_RS19375 0.10 +0.7
4,226,258 + AMB_RS19375 0.10 -0.1
4,226,259 - AMB_RS19375 0.10 +0.5
4,226,440 + AMB_RS19375 0.17 +0.7
4,226,440 + AMB_RS19375 0.17 +0.7
4,226,441 - AMB_RS19375 0.17 -0.6
4,226,567 - AMB_RS19375 0.22 +0.9
4,226,618 + AMB_RS19375 0.24 +0.7
4,226,618 + AMB_RS19375 0.24 -1.4
4,226,618 + AMB_RS19375 0.24 -1.7
4,226,619 - AMB_RS19375 0.24 -0.2
4,226,619 - AMB_RS19375 0.24 -0.1
4,226,634 - AMB_RS19375 0.25 -2.1
4,226,634 - AMB_RS19375 0.25 +0.3

Or see this region's nucleotide sequence