Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19180

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19175 and AMB_RS19180 overlap by 1 nucleotidesAMB_RS19180 and AMB_RS19185 are separated by 15 nucleotides AMB_RS19175: AMB_RS19175 - NAD-dependent epimerase, at 4,168,660 to 4,169,742 _RS19175 AMB_RS19180: AMB_RS19180 - glycosyltransferase family 1 protein, at 4,169,742 to 4,170,956 _RS19180 AMB_RS19185: AMB_RS19185 - radical SAM protein, at 4,170,972 to 4,172,318 _RS19185 Position (kb) 4169 4170 4171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4169.074 kb on + strand, within AMB_RS19175at 4169.075 kb on - strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.341 kb on + strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.389 kb on + strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.593 kb on - strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.665 kb on + strandat 4169.666 kb on - strandat 4169.666 kb on - strandat 4169.666 kb on - strandat 4169.751 kb on + strandat 4169.751 kb on + strandat 4169.752 kb on - strandat 4169.752 kb on - strandat 4169.775 kb on - strandat 4169.856 kb on + strandat 4169.856 kb on + strandat 4169.918 kb on + strand, within AMB_RS19180at 4169.918 kb on + strand, within AMB_RS19180at 4169.918 kb on + strand, within AMB_RS19180at 4169.919 kb on - strand, within AMB_RS19180at 4169.919 kb on - strand, within AMB_RS19180at 4169.923 kb on - strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.317 kb on - strand, within AMB_RS19180at 4170.317 kb on - strand, within AMB_RS19180at 4170.415 kb on + strand, within AMB_RS19180at 4170.415 kb on + strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.492 kb on - strand, within AMB_RS19180at 4170.510 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.684 kb on + strand, within AMB_RS19180at 4170.791 kb on - strand, within AMB_RS19180at 4170.791 kb on - strand, within AMB_RS19180at 4170.791 kb on - strand, within AMB_RS19180at 4170.791 kb on - strand, within AMB_RS19180at 4170.791 kb on - strand, within AMB_RS19180at 4170.965 kb on + strandat 4170.965 kb on + strandat 4170.965 kb on + strandat 4170.965 kb on + strandat 4170.965 kb on + strandat 4170.965 kb on + strandat 4170.966 kb on - strandat 4170.966 kb on - strandat 4170.966 kb on - strandat 4170.966 kb on - strandat 4171.021 kb on - strandat 4171.122 kb on + strand, within AMB_RS19185at 4171.122 kb on + strand, within AMB_RS19185at 4171.122 kb on + strand, within AMB_RS19185at 4171.123 kb on - strand, within AMB_RS19185at 4171.123 kb on - strand, within AMB_RS19185at 4171.137 kb on + strand, within AMB_RS19185at 4171.137 kb on + strand, within AMB_RS19185at 4171.152 kb on + strand, within AMB_RS19185at 4171.152 kb on + strand, within AMB_RS19185at 4171.152 kb on + strand, within AMB_RS19185at 4171.153 kb on - strand, within AMB_RS19185at 4171.153 kb on - strand, within AMB_RS19185at 4171.153 kb on - strand, within AMB_RS19185at 4171.153 kb on - strand, within AMB_RS19185at 4171.239 kb on + strand, within AMB_RS19185at 4171.248 kb on + strand, within AMB_RS19185at 4171.248 kb on + strand, within AMB_RS19185at 4171.248 kb on + strand, within AMB_RS19185at 4171.248 kb on + strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.249 kb on - strand, within AMB_RS19185at 4171.251 kb on + strand, within AMB_RS19185at 4171.251 kb on + strand, within AMB_RS19185at 4171.252 kb on - strand, within AMB_RS19185at 4171.252 kb on - strand, within AMB_RS19185at 4171.549 kb on - strand, within AMB_RS19185at 4171.621 kb on + strand, within AMB_RS19185at 4171.621 kb on + strand, within AMB_RS19185at 4171.622 kb on - strand, within AMB_RS19185at 4171.644 kb on + strand, within AMB_RS19185at 4171.644 kb on + strand, within AMB_RS19185at 4171.645 kb on - strand, within AMB_RS19185at 4171.725 kb on + strand, within AMB_RS19185at 4171.725 kb on + strand, within AMB_RS19185at 4171.726 kb on - strand, within AMB_RS19185at 4171.726 kb on - strand, within AMB_RS19185at 4171.726 kb on - strand, within AMB_RS19185at 4171.726 kb on - strand, within AMB_RS19185at 4171.737 kb on + strand, within AMB_RS19185at 4171.737 kb on + strand, within AMB_RS19185at 4171.737 kb on + strand, within AMB_RS19185at 4171.738 kb on - strand, within AMB_RS19185at 4171.738 kb on - strand, within AMB_RS19185at 4171.738 kb on - strand, within AMB_RS19185at 4171.738 kb on - strand, within AMB_RS19185at 4171.773 kb on + strand, within AMB_RS19185at 4171.792 kb on - strand, within AMB_RS19185at 4171.792 kb on - strand, within AMB_RS19185

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,168,837 + AMB_RS19175 0.16 +0.1
4,168,837 + AMB_RS19175 0.16 -0.2
4,168,837 + AMB_RS19175 0.16 -0.1
4,169,074 + AMB_RS19175 0.38 -2.8
4,169,075 - AMB_RS19175 0.38 -1.1
4,169,210 + AMB_RS19175 0.51 -0.1
4,169,210 + AMB_RS19175 0.51 -0.1
4,169,245 + AMB_RS19175 0.54 -2.1
4,169,245 + AMB_RS19175 0.54 -2.1
4,169,245 + AMB_RS19175 0.54 -1.8
4,169,341 + AMB_RS19175 0.63 -2.8
4,169,375 - AMB_RS19175 0.66 -1.6
4,169,375 - AMB_RS19175 0.66 -1.1
4,169,376 + AMB_RS19175 0.66 -0.9
4,169,376 + AMB_RS19175 0.66 -0.6
4,169,376 + AMB_RS19175 0.66 +0.9
4,169,376 + AMB_RS19175 0.66 -2.3
4,169,376 + AMB_RS19175 0.66 -1.9
4,169,376 + AMB_RS19175 0.66 -0.4
4,169,377 - AMB_RS19175 0.66 -1.2
4,169,377 - AMB_RS19175 0.66 -0.5
4,169,389 + AMB_RS19175 0.67 -2.3
4,169,390 - AMB_RS19175 0.67 -1.8
4,169,390 - AMB_RS19175 0.67 +0.9
4,169,482 + AMB_RS19175 0.76 -1.3
4,169,482 + AMB_RS19175 0.76 -0.6
4,169,482 + AMB_RS19175 0.76 -1.3
4,169,482 + AMB_RS19175 0.76 +0.6
4,169,483 - AMB_RS19175 0.76 +1.7
4,169,483 - AMB_RS19175 0.76 -0.7
4,169,575 + AMB_RS19175 0.84 -1.7
4,169,575 + AMB_RS19175 0.84 -0.0
4,169,576 - AMB_RS19175 0.85 -0.3
4,169,576 - AMB_RS19175 0.85 -0.2
4,169,576 - AMB_RS19175 0.85 +0.4
4,169,576 - AMB_RS19175 0.85 -0.3
4,169,593 - AMB_RS19175 0.86 -0.1
4,169,604 + AMB_RS19175 0.87 -0.6
4,169,604 + AMB_RS19175 0.87 +0.2
4,169,604 + AMB_RS19175 0.87 +0.1
4,169,604 + AMB_RS19175 0.87 +0.1
4,169,605 - AMB_RS19175 0.87 +0.1
4,169,605 - AMB_RS19175 0.87 -0.8
4,169,605 - AMB_RS19175 0.87 +0.1
4,169,605 - AMB_RS19175 0.87 -1.6
4,169,605 - AMB_RS19175 0.87 +0.7
4,169,605 - AMB_RS19175 0.87 +0.7
4,169,605 - AMB_RS19175 0.87 +0.1
4,169,665 + -0.9
4,169,666 - -0.3
4,169,666 - +0.2
4,169,666 - +0.1
4,169,751 + -1.5
4,169,751 + -1.3
4,169,752 - -3.0
4,169,752 - -0.9
4,169,775 - -0.3
4,169,856 + +0.7
4,169,856 + -1.5
4,169,918 + AMB_RS19180 0.14 -3.2
4,169,918 + AMB_RS19180 0.14 -1.3
4,169,918 + AMB_RS19180 0.14 -1.2
4,169,919 - AMB_RS19180 0.15 -1.4
4,169,919 - AMB_RS19180 0.15 -0.8
4,169,923 - AMB_RS19180 0.15 -2.8
4,169,931 + AMB_RS19180 0.16 +0.1
4,169,931 + AMB_RS19180 0.16 -0.6
4,169,931 + AMB_RS19180 0.16 +0.3
4,169,931 + AMB_RS19180 0.16 -2.2
4,169,932 - AMB_RS19180 0.16 -0.4
4,169,932 - AMB_RS19180 0.16 -1.2
4,169,932 - AMB_RS19180 0.16 -2.1
4,169,932 - AMB_RS19180 0.16 -1.1
4,169,932 - AMB_RS19180 0.16 -2.2
4,169,932 - AMB_RS19180 0.16 +1.5
4,170,039 + AMB_RS19180 0.24 +1.6
4,170,039 + AMB_RS19180 0.24 -1.6
4,170,039 + AMB_RS19180 0.24 +0.5
4,170,039 + AMB_RS19180 0.24 -1.5
4,170,040 - AMB_RS19180 0.25 +1.3
4,170,040 - AMB_RS19180 0.25 +0.7
4,170,040 - AMB_RS19180 0.25 -2.1
4,170,040 - AMB_RS19180 0.25 -3.5
4,170,040 - AMB_RS19180 0.25 -2.3
4,170,231 + AMB_RS19180 0.40 -0.3
4,170,231 + AMB_RS19180 0.40 -0.7
4,170,231 + AMB_RS19180 0.40 +0.1
4,170,317 - AMB_RS19180 0.47 -0.7
4,170,317 - AMB_RS19180 0.47 -1.3
4,170,415 + AMB_RS19180 0.55 -3.0
4,170,415 + AMB_RS19180 0.55 -0.7
4,170,416 - AMB_RS19180 0.55 -0.6
4,170,416 - AMB_RS19180 0.55 -0.6
4,170,416 - AMB_RS19180 0.55 +0.1
4,170,492 - AMB_RS19180 0.62 +0.1
4,170,510 - AMB_RS19180 0.63 +0.1
4,170,658 - AMB_RS19180 0.75 -4.1
4,170,658 - AMB_RS19180 0.75 +0.7
4,170,658 - AMB_RS19180 0.75 -1.9
4,170,684 + AMB_RS19180 0.78 +0.9
4,170,791 - AMB_RS19180 0.86 -1.9
4,170,791 - AMB_RS19180 0.86 -0.3
4,170,791 - AMB_RS19180 0.86 -1.4
4,170,791 - AMB_RS19180 0.86 -1.3
4,170,791 - AMB_RS19180 0.86 -0.6
4,170,965 + -1.0
4,170,965 + -1.9
4,170,965 + -1.5
4,170,965 + -1.3
4,170,965 + -1.5
4,170,965 + -0.6
4,170,966 - -2.4
4,170,966 - -1.6
4,170,966 - -0.8
4,170,966 - +0.1
4,171,021 - -0.9
4,171,122 + AMB_RS19185 0.11 -0.1
4,171,122 + AMB_RS19185 0.11 -0.6
4,171,122 + AMB_RS19185 0.11 -0.3
4,171,123 - AMB_RS19185 0.11 +0.7
4,171,123 - AMB_RS19185 0.11 -1.9
4,171,137 + AMB_RS19185 0.12 -0.9
4,171,137 + AMB_RS19185 0.12 -1.9
4,171,152 + AMB_RS19185 0.13 -2.6
4,171,152 + AMB_RS19185 0.13 -1.5
4,171,152 + AMB_RS19185 0.13 +0.6
4,171,153 - AMB_RS19185 0.13 -0.4
4,171,153 - AMB_RS19185 0.13 -1.6
4,171,153 - AMB_RS19185 0.13 -1.3
4,171,153 - AMB_RS19185 0.13 -1.3
4,171,239 + AMB_RS19185 0.20 -0.9
4,171,248 + AMB_RS19185 0.20 -0.3
4,171,248 + AMB_RS19185 0.20 +0.5
4,171,248 + AMB_RS19185 0.20 +0.7
4,171,248 + AMB_RS19185 0.20 -0.4
4,171,249 - AMB_RS19185 0.21 -1.2
4,171,249 - AMB_RS19185 0.21 -0.6
4,171,249 - AMB_RS19185 0.21 -0.6
4,171,249 - AMB_RS19185 0.21 +0.7
4,171,249 - AMB_RS19185 0.21 +0.5
4,171,249 - AMB_RS19185 0.21 -2.2
4,171,249 - AMB_RS19185 0.21 -0.6
4,171,249 - AMB_RS19185 0.21 -1.1
4,171,249 - AMB_RS19185 0.21 -0.3
4,171,251 + AMB_RS19185 0.21 -0.9
4,171,251 + AMB_RS19185 0.21 -2.4
4,171,252 - AMB_RS19185 0.21 -0.4
4,171,252 - AMB_RS19185 0.21 -0.5
4,171,549 - AMB_RS19185 0.43 -0.5
4,171,621 + AMB_RS19185 0.48 -3.2
4,171,621 + AMB_RS19185 0.48 -1.1
4,171,622 - AMB_RS19185 0.48 -0.3
4,171,644 + AMB_RS19185 0.50 -2.6
4,171,644 + AMB_RS19185 0.50 -0.6
4,171,645 - AMB_RS19185 0.50 -1.3
4,171,725 + AMB_RS19185 0.56 +0.1
4,171,725 + AMB_RS19185 0.56 -0.1
4,171,726 - AMB_RS19185 0.56 -0.6
4,171,726 - AMB_RS19185 0.56 -1.5
4,171,726 - AMB_RS19185 0.56 -3.1
4,171,726 - AMB_RS19185 0.56 +0.1
4,171,737 + AMB_RS19185 0.57 -0.3
4,171,737 + AMB_RS19185 0.57 -0.3
4,171,737 + AMB_RS19185 0.57 -0.9
4,171,738 - AMB_RS19185 0.57 -0.6
4,171,738 - AMB_RS19185 0.57 -0.3
4,171,738 - AMB_RS19185 0.57 -0.3
4,171,738 - AMB_RS19185 0.57 -0.8
4,171,773 + AMB_RS19185 0.59 -0.4
4,171,792 - AMB_RS19185 0.61 -0.3
4,171,792 - AMB_RS19185 0.61 +0.5

Or see this region's nucleotide sequence