Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19055

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23605 and AMB_RS19055 overlap by 4 nucleotidesAMB_RS19055 and AMB_RS23610 overlap by 11 nucleotides AMB_RS23605: AMB_RS23605 - transposase, at 4,135,961 to 4,137,922 _RS23605 AMB_RS19055: AMB_RS19055 - heteromeric transposase endonuclease subunit TnsA, at 4,137,919 to 4,138,602 _RS19055 AMB_RS23610: AMB_RS23610 - hypothetical protein, at 4,138,592 to 4,139,938 _RS23610 Position (kb) 4137 4138 4139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4136.947 kb on - strand, within AMB_RS23605at 4136.947 kb on - strand, within AMB_RS23605at 4136.947 kb on - strand, within AMB_RS23605at 4137.114 kb on + strand, within AMB_RS23605at 4137.197 kb on + strand, within AMB_RS23605at 4137.197 kb on + strand, within AMB_RS23605at 4137.197 kb on + strand, within AMB_RS23605at 4137.198 kb on - strand, within AMB_RS23605at 4137.198 kb on - strand, within AMB_RS23605at 4137.424 kb on + strand, within AMB_RS23605at 4137.460 kb on - strand, within AMB_RS23605at 4137.460 kb on - strand, within AMB_RS23605at 4137.573 kb on + strand, within AMB_RS23605at 4137.574 kb on - strand, within AMB_RS23605at 4137.574 kb on - strand, within AMB_RS23605at 4137.574 kb on - strand, within AMB_RS23605at 4137.591 kb on + strand, within AMB_RS23605at 4137.591 kb on + strand, within AMB_RS23605at 4137.591 kb on + strand, within AMB_RS23605at 4137.592 kb on - strand, within AMB_RS23605at 4137.592 kb on - strand, within AMB_RS23605at 4137.592 kb on - strand, within AMB_RS23605at 4137.608 kb on + strand, within AMB_RS23605at 4137.608 kb on + strand, within AMB_RS23605at 4137.609 kb on - strand, within AMB_RS23605at 4137.609 kb on - strand, within AMB_RS23605at 4137.609 kb on - strand, within AMB_RS23605at 4137.609 kb on - strand, within AMB_RS23605at 4137.609 kb on - strand, within AMB_RS23605at 4138.247 kb on + strand, within AMB_RS19055at 4138.248 kb on - strand, within AMB_RS19055at 4138.248 kb on - strand, within AMB_RS19055at 4138.310 kb on + strand, within AMB_RS19055at 4138.376 kb on + strand, within AMB_RS19055at 4138.376 kb on + strand, within AMB_RS19055at 4138.376 kb on + strand, within AMB_RS19055at 4138.377 kb on - strand, within AMB_RS19055at 4138.377 kb on - strand, within AMB_RS19055at 4138.377 kb on - strand, within AMB_RS19055at 4138.377 kb on - strand, within AMB_RS19055at 4138.406 kb on + strand, within AMB_RS19055at 4138.406 kb on + strand, within AMB_RS19055at 4138.406 kb on + strand, within AMB_RS19055at 4138.407 kb on - strand, within AMB_RS19055at 4138.407 kb on - strand, within AMB_RS19055at 4138.407 kb on - strand, within AMB_RS19055at 4138.407 kb on - strand, within AMB_RS19055at 4138.496 kb on - strand, within AMB_RS19055at 4138.496 kb on - strand, within AMB_RS19055at 4138.496 kb on - strand, within AMB_RS19055at 4138.496 kb on - strand, within AMB_RS19055at 4138.550 kb on + strandat 4138.571 kb on - strandat 4138.697 kb on - strandat 4138.757 kb on + strand, within AMB_RS23610at 4138.758 kb on - strand, within AMB_RS23610at 4138.778 kb on + strand, within AMB_RS23610at 4138.778 kb on + strand, within AMB_RS23610at 4138.779 kb on - strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.850 kb on + strand, within AMB_RS23610at 4138.851 kb on - strand, within AMB_RS23610at 4138.851 kb on - strand, within AMB_RS23610at 4138.851 kb on - strand, within AMB_RS23610at 4138.851 kb on - strand, within AMB_RS23610at 4138.851 kb on - strand, within AMB_RS23610at 4138.855 kb on + strand, within AMB_RS23610at 4138.855 kb on + strand, within AMB_RS23610at 4138.855 kb on + strand, within AMB_RS23610at 4138.855 kb on + strand, within AMB_RS23610at 4138.856 kb on - strand, within AMB_RS23610at 4138.856 kb on - strand, within AMB_RS23610at 4138.856 kb on - strand, within AMB_RS23610at 4138.856 kb on - strand, within AMB_RS23610at 4138.874 kb on + strand, within AMB_RS23610at 4138.874 kb on + strand, within AMB_RS23610at 4138.875 kb on - strand, within AMB_RS23610at 4138.875 kb on - strand, within AMB_RS23610at 4138.875 kb on - strand, within AMB_RS23610at 4138.875 kb on - strand, within AMB_RS23610at 4139.004 kb on + strand, within AMB_RS23610at 4139.004 kb on + strand, within AMB_RS23610at 4139.005 kb on - strand, within AMB_RS23610at 4139.276 kb on + strand, within AMB_RS23610at 4139.277 kb on - strand, within AMB_RS23610at 4139.277 kb on - strand, within AMB_RS23610at 4139.292 kb on + strand, within AMB_RS23610at 4139.292 kb on + strand, within AMB_RS23610at 4139.293 kb on - strand, within AMB_RS23610at 4139.317 kb on + strand, within AMB_RS23610at 4139.318 kb on - strand, within AMB_RS23610at 4139.556 kb on + strand, within AMB_RS23610at 4139.556 kb on + strand, within AMB_RS23610at 4139.556 kb on + strand, within AMB_RS23610at 4139.557 kb on - strand, within AMB_RS23610at 4139.557 kb on - strand, within AMB_RS23610at 4139.557 kb on - strand, within AMB_RS23610

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,136,947 - AMB_RS23605 0.50 -2.8
4,136,947 - AMB_RS23605 0.50 +0.1
4,136,947 - AMB_RS23605 0.50 -1.3
4,137,114 + AMB_RS23605 0.59 -2.8
4,137,197 + AMB_RS23605 0.63 -0.2
4,137,197 + AMB_RS23605 0.63 -1.9
4,137,197 + AMB_RS23605 0.63 -0.3
4,137,198 - AMB_RS23605 0.63 +0.0
4,137,198 - AMB_RS23605 0.63 +0.1
4,137,424 + AMB_RS23605 0.75 -1.6
4,137,460 - AMB_RS23605 0.76 -1.5
4,137,460 - AMB_RS23605 0.76 -0.9
4,137,573 + AMB_RS23605 0.82 +0.1
4,137,574 - AMB_RS23605 0.82 +0.7
4,137,574 - AMB_RS23605 0.82 -0.2
4,137,574 - AMB_RS23605 0.82 +0.3
4,137,591 + AMB_RS23605 0.83 -1.6
4,137,591 + AMB_RS23605 0.83 -0.6
4,137,591 + AMB_RS23605 0.83 +4.3
4,137,592 - AMB_RS23605 0.83 -0.9
4,137,592 - AMB_RS23605 0.83 -0.9
4,137,592 - AMB_RS23605 0.83 +0.1
4,137,608 + AMB_RS23605 0.84 -0.3
4,137,608 + AMB_RS23605 0.84 -0.0
4,137,609 - AMB_RS23605 0.84 -0.1
4,137,609 - AMB_RS23605 0.84 -1.0
4,137,609 - AMB_RS23605 0.84 -0.9
4,137,609 - AMB_RS23605 0.84 +0.7
4,137,609 - AMB_RS23605 0.84 -0.1
4,138,247 + AMB_RS19055 0.48 -0.6
4,138,248 - AMB_RS19055 0.48 +0.1
4,138,248 - AMB_RS19055 0.48 -1.3
4,138,310 + AMB_RS19055 0.57 -1.0
4,138,376 + AMB_RS19055 0.67 -0.9
4,138,376 + AMB_RS19055 0.67 -0.3
4,138,376 + AMB_RS19055 0.67 -0.3
4,138,377 - AMB_RS19055 0.67 -0.1
4,138,377 - AMB_RS19055 0.67 -0.6
4,138,377 - AMB_RS19055 0.67 -1.0
4,138,377 - AMB_RS19055 0.67 +0.1
4,138,406 + AMB_RS19055 0.71 -1.1
4,138,406 + AMB_RS19055 0.71 +0.1
4,138,406 + AMB_RS19055 0.71 -0.3
4,138,407 - AMB_RS19055 0.71 +0.7
4,138,407 - AMB_RS19055 0.71 -0.4
4,138,407 - AMB_RS19055 0.71 +0.1
4,138,407 - AMB_RS19055 0.71 +0.7
4,138,496 - AMB_RS19055 0.84 -2.8
4,138,496 - AMB_RS19055 0.84 -0.9
4,138,496 - AMB_RS19055 0.84 -0.3
4,138,496 - AMB_RS19055 0.84 -0.6
4,138,550 + +0.8
4,138,571 - -0.0
4,138,697 - -4.0
4,138,757 + AMB_RS23610 0.12 +1.5
4,138,758 - AMB_RS23610 0.12 +0.1
4,138,778 + AMB_RS23610 0.14 -0.9
4,138,778 + AMB_RS23610 0.14 -0.8
4,138,779 - AMB_RS23610 0.14 +0.1
4,138,850 + AMB_RS23610 0.19 -0.6
4,138,850 + AMB_RS23610 0.19 -0.6
4,138,850 + AMB_RS23610 0.19 -1.8
4,138,850 + AMB_RS23610 0.19 -0.9
4,138,850 + AMB_RS23610 0.19 -1.0
4,138,850 + AMB_RS23610 0.19 +0.2
4,138,851 - AMB_RS23610 0.19 -1.0
4,138,851 - AMB_RS23610 0.19 +1.6
4,138,851 - AMB_RS23610 0.19 +1.0
4,138,851 - AMB_RS23610 0.19 -2.6
4,138,851 - AMB_RS23610 0.19 +0.4
4,138,855 + AMB_RS23610 0.20 -0.1
4,138,855 + AMB_RS23610 0.20 -2.9
4,138,855 + AMB_RS23610 0.20 -0.9
4,138,855 + AMB_RS23610 0.20 +0.7
4,138,856 - AMB_RS23610 0.20 +0.1
4,138,856 - AMB_RS23610 0.20 +0.2
4,138,856 - AMB_RS23610 0.20 -3.9
4,138,856 - AMB_RS23610 0.20 -1.4
4,138,874 + AMB_RS23610 0.21 -0.2
4,138,874 + AMB_RS23610 0.21 -0.9
4,138,875 - AMB_RS23610 0.21 -0.2
4,138,875 - AMB_RS23610 0.21 +1.7
4,138,875 - AMB_RS23610 0.21 -1.6
4,138,875 - AMB_RS23610 0.21 -0.1
4,139,004 + AMB_RS23610 0.31 +1.7
4,139,004 + AMB_RS23610 0.31 -0.6
4,139,005 - AMB_RS23610 0.31 +1.7
4,139,276 + AMB_RS23610 0.51 -0.8
4,139,277 - AMB_RS23610 0.51 -1.0
4,139,277 - AMB_RS23610 0.51 -2.7
4,139,292 + AMB_RS23610 0.52 -2.8
4,139,292 + AMB_RS23610 0.52 +0.0
4,139,293 - AMB_RS23610 0.52 -2.7
4,139,317 + AMB_RS23610 0.54 +0.7
4,139,318 - AMB_RS23610 0.54 -1.1
4,139,556 + AMB_RS23610 0.72 -2.4
4,139,556 + AMB_RS23610 0.72 +0.7
4,139,556 + AMB_RS23610 0.72 -0.8
4,139,557 - AMB_RS23610 0.72 -1.6
4,139,557 - AMB_RS23610 0.72 -0.6
4,139,557 - AMB_RS23610 0.72 +0.9

Or see this region's nucleotide sequence