Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19040

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
4,134,744	+				-0.5
4,134,746	+				-0.1
4,134,746	+				-1.0
4,134,746	+				-1.1
4,134,746	+				-0.6
4,134,746	+				+1.0
4,134,746	+				-2.0
4,134,746	+				-0.5
4,134,746	+				+0.2
4,134,746	+				+1.0
4,134,746	+				-0.2
4,134,747	-				+1.1
4,134,747	-				-0.9
4,134,747	-				-0.8
4,134,789	+				+1.5
4,134,790	-				-0.6
4,134,790	-				-2.1
4,134,843	-				-0.1
4,134,843	-				-0.3
4,134,880	+				+0.1
4,134,880	+				-1.1
4,134,881	-				-1.1
4,134,881	-				-0.8
4,134,912	-				-4.5
4,135,121	+		AMB_RS19035	0.19	+1.7
4,135,121	+		AMB_RS19035	0.19	-0.6
4,135,121	+		AMB_RS19035	0.19	-1.7
4,135,122	-		AMB_RS19035	0.19	-3.4
4,135,122	-		AMB_RS19035	0.19	-0.7
4,135,122	-		AMB_RS19035	0.19	-2.2
4,135,122	-		AMB_RS19035	0.19	-0.3
4,135,122	-		AMB_RS19035	0.19	-1.0
4,135,175	+		AMB_RS19035	0.27	+0.2
4,135,194	+		AMB_RS19035	0.29	-0.6
4,135,194	+		AMB_RS19035	0.29	-1.3
4,135,195	-		AMB_RS19035	0.30	-0.2
4,135,195	-		AMB_RS19035	0.30	+0.2
4,135,195	-		AMB_RS19035	0.30	-0.5
4,135,241	+		AMB_RS19035	0.36	+1.7
4,135,241	+		AMB_RS19035	0.36	+0.5
4,135,241	+		AMB_RS19035	0.36	-1.6
4,135,241	+		AMB_RS19035	0.36	+0.2
4,135,241	+		AMB_RS19035	0.36	-0.3
4,135,242	-		AMB_RS19035	0.36	-3.2
4,135,242	-		AMB_RS19035	0.36	-0.1
4,135,242	-		AMB_RS19035	0.36	+0.7
4,135,274	+		AMB_RS19035	0.41	+0.1
4,135,274	+		AMB_RS19035	0.41	-0.8
4,135,314	+		AMB_RS19035	0.46	-0.3
4,135,314	+		AMB_RS19035	0.46	-0.7
4,135,315	-		AMB_RS19035	0.46	-0.5
4,135,345	+		AMB_RS19035	0.51	-0.3
4,135,345	+		AMB_RS19035	0.51	-0.9
4,135,345	+		AMB_RS19035	0.51	-0.4
4,135,345	+		AMB_RS19035	0.51	+0.2
4,135,346	-		AMB_RS19035	0.51	+0.8
4,135,346	-		AMB_RS19035	0.51	-0.3
4,135,402	+		AMB_RS19035	0.59	-2.6
4,135,402	+		AMB_RS19035	0.59	-0.6
4,135,402	+		AMB_RS19035	0.59	-0.3
4,135,403	-		AMB_RS19035	0.59	+0.7
4,135,403	-		AMB_RS19035	0.59	+0.4
4,135,403	-		AMB_RS19035	0.59	-0.3
4,135,403	-		AMB_RS19035	0.59	+1.9
4,135,403	-		AMB_RS19035	0.59	-1.1
4,135,403	-		AMB_RS19035	0.59	-1.1
4,135,403	-		AMB_RS19035	0.59	-0.9
4,135,403	-		AMB_RS19035	0.59	+0.7
4,135,493	-		AMB_RS19035	0.71	-0.7
4,135,553	+		AMB_RS19035	0.80	+0.1
4,135,553	+		AMB_RS19035	0.80	-1.0
4,135,553	+		AMB_RS19035	0.80	+0.1
4,135,553	+		AMB_RS19035	0.80	+0.1
4,135,553	+		AMB_RS19035	0.80	-0.3
4,135,553	+		AMB_RS19035	0.80	-0.9
4,135,553	+		AMB_RS19035	0.80	-1.1
4,135,554	-		AMB_RS19035	0.80	-1.1
4,135,554	-		AMB_RS19035	0.80	-0.3
4,135,554	-		AMB_RS19035	0.80	-0.6
4,135,554	-		AMB_RS19035	0.80	-1.9
4,135,554	-		AMB_RS19035	0.80	-0.9
4,135,554	-		AMB_RS19035	0.80	-0.6
4,135,554	-		AMB_RS19035	0.80	+0.7
4,135,737	+				+1.7
4,135,737	+				-0.4
4,135,737	+				-2.8
4,135,737	+				-0.9
4,135,737	+				+0.4
4,135,737	+				-2.8
4,135,737	+				+0.3
4,135,738	-				-0.6
4,135,738	-				-1.5
4,135,837	+		AMB_RS19040	0.45	-3.0
4,135,837	+		AMB_RS19040	0.45	-1.8
4,135,837	+		AMB_RS19040	0.45	-1.3
4,135,838	-		AMB_RS19040	0.46	-2.3
4,135,892	+		AMB_RS19040	0.71	-0.6
4,135,892	+		AMB_RS19040	0.71	+1.3
4,135,893	-		AMB_RS19040	0.71	-0.9
4,135,893	-		AMB_RS19040	0.71	-0.6
4,136,020	+				+0.1
4,136,020	+				+0.3
4,136,020	+				-1.8
4,136,020	+				-1.1
4,136,020	+				+0.5
4,136,021	-				+0.5
4,136,021	-				-1.3
4,136,021	-				-0.3
4,136,021	-				-0.2
4,136,079	+				+0.7
4,136,118	+				+0.2
4,136,118	+				-0.9
4,136,119	-				-2.1
4,136,127	+				-0.6
4,136,127	+				-0.9
4,136,127	+				-1.6
4,136,128	-				-0.6
4,136,128	-				+0.7
4,136,128	-				-0.6
4,136,128	-				-1.1
4,136,128	-				+0.1
4,136,128	-				+1.5
4,136,133	+				-0.9
4,136,133	+				-0.9
4,136,133	+				-1.8
4,136,133	+				+0.2
4,136,133	+				-2.1
4,136,133	+				-1.3
4,136,134	-				-1.3
4,136,134	-				+0.2
4,136,379	+		AMB_RS23605	0.21	+0.2
4,136,380	-		AMB_RS23605	0.21	-1.2
4,136,424	+		AMB_RS23605	0.24	-2.3
4,136,424	+		AMB_RS23605	0.24	+0.1
4,136,424	+		AMB_RS23605	0.24	-0.8
4,136,425	-		AMB_RS23605	0.24	-0.2
4,136,425	-		AMB_RS23605	0.24	-1.2
4,136,425	-		AMB_RS23605	0.24	-1.3
4,136,425	-		AMB_RS23605	0.24	-0.2
4,136,425	-		AMB_RS23605	0.24	+1.0
4,136,425	-		AMB_RS23605	0.24	-0.6
4,136,442	+		AMB_RS23605	0.25	-0.5
4,136,442	+		AMB_RS23605	0.25	-1.3
4,136,442	+		AMB_RS23605	0.25	-0.4
4,136,442	+		AMB_RS23605	0.25	-0.3
4,136,443	-		AMB_RS23605	0.25	+0.2
4,136,443	-		AMB_RS23605	0.25	-3.0
4,136,443	-		AMB_RS23605	0.25	+1.3
4,136,443	-		AMB_RS23605	0.25	-1.8
4,136,443	-		AMB_RS23605	0.25	-0.2
4,136,443	-		AMB_RS23605	0.25	+0.3
4,136,443	-		AMB_RS23605	0.25	-2.9
4,136,443	-		AMB_RS23605	0.25	-0.3
4,136,443	-		AMB_RS23605	0.25	+1.1
4,136,443	-		AMB_RS23605	0.25	-2.2
4,136,464	-		AMB_RS23605	0.26	-0.3
4,136,539	+		AMB_RS23605	0.29	-2.2
4,136,540	-		AMB_RS23605	0.30	+0.1
4,136,540	-		AMB_RS23605	0.30	+0.1
4,136,540	-		AMB_RS23605	0.30	-0.9
4,136,540	-		AMB_RS23605	0.30	-0.0
4,136,619	+		AMB_RS23605	0.34	-0.4
4,136,619	+		AMB_RS23605	0.34	-1.3
4,136,619	+		AMB_RS23605	0.34	-3.4
4,136,620	-		AMB_RS23605	0.34	-0.2
4,136,620	-		AMB_RS23605	0.34	-1.0
4,136,620	-		AMB_RS23605	0.34	-1.1
4,136,858	+		AMB_RS23605	0.46	+1.7
4,136,947	-		AMB_RS23605	0.50	-2.8
4,136,947	-		AMB_RS23605	0.50	+0.1
4,136,947	-		AMB_RS23605	0.50	-1.3