Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18800

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18795 and AMB_RS18800 are separated by 83 nucleotidesAMB_RS18800 and AMB_RS18805 overlap by 32 nucleotides AMB_RS18795: AMB_RS18795 - FAD-binding oxidoreductase, at 4,080,541 to 4,081,950 _RS18795 AMB_RS18800: AMB_RS18800 - LPS export ABC transporter permease LptF, at 4,082,034 to 4,083,140 _RS18800 AMB_RS18805: AMB_RS18805 - LPS-assembly protein LptD, at 4,083,109 to 4,085,925 _RS18805 Position (kb) 4082 4083 4084Strain fitness (log2 ratio) -3 -2 -1 0 1at 4081.852 kb on + strandat 4081.853 kb on - strandat 4081.853 kb on - strandat 4081.953 kb on + strandat 4081.993 kb on + strandat 4082.031 kb on + strandat 4083.128 kb on + strandat 4083.128 kb on + strandat 4083.138 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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4,081,852 + -3.2
4,081,853 - -0.5
4,081,853 - -2.6
4,081,953 + +0.1
4,081,993 + -3.4
4,082,031 + +0.3
4,083,128 + -0.3
4,083,128 + -0.3
4,083,138 + -0.2

Or see this region's nucleotide sequence