Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18180

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
3,943,974	+		AMB_RS18175	0.13	+0.6
3,943,974	+		AMB_RS18175	0.13	-0.6
3,943,974	+		AMB_RS18175	0.13	+0.3
3,943,974	+		AMB_RS18175	0.13	-0.1
3,943,975	-		AMB_RS18175	0.14	-1.4
3,943,975	-		AMB_RS18175	0.14	-1.5
3,944,008	-		AMB_RS18175	0.17	-0.3
3,944,223	+		AMB_RS18175	0.37	-0.7
3,944,223	+		AMB_RS18175	0.37	-0.9
3,944,224	-		AMB_RS18175	0.37	-2.2
3,944,341	-		AMB_RS18175	0.48	+0.1
3,944,370	+		AMB_RS18175	0.50	+1.6
3,944,371	-		AMB_RS18175	0.51	-2.1
3,944,400	+		AMB_RS18175	0.53	-0.6
3,944,400	+		AMB_RS18175	0.53	-1.5
3,944,400	+		AMB_RS18175	0.53	-0.4
3,944,400	+		AMB_RS18175	0.53	-0.7
3,944,400	+		AMB_RS18175	0.53	-1.0
3,944,400	+		AMB_RS18175	0.53	-0.3
3,944,400	+		AMB_RS18175	0.53	-0.4
3,944,400	+		AMB_RS18175	0.53	-0.9
3,944,401	-		AMB_RS18175	0.53	+0.7
3,944,401	-		AMB_RS18175	0.53	-0.9
3,944,401	-		AMB_RS18175	0.53	+0.4
3,944,401	-		AMB_RS18175	0.53	-0.4
3,944,466	+		AMB_RS18175	0.59	-1.9
3,944,467	-		AMB_RS18175	0.59	-0.4
3,944,467	-		AMB_RS18175	0.59	-0.2
3,944,505	+		AMB_RS18175	0.63	-0.4
3,944,505	+		AMB_RS18175	0.63	+0.3
3,944,505	+		AMB_RS18175	0.63	-2.3
3,944,506	-		AMB_RS18175	0.63	-0.4
3,944,539	-		AMB_RS18175	0.66	-1.2
3,944,571	+		AMB_RS18175	0.69	-0.4
3,944,571	+		AMB_RS18175	0.69	-2.2
3,944,572	-		AMB_RS18175	0.69	-1.4
3,944,572	-		AMB_RS18175	0.69	-0.7
3,944,580	+		AMB_RS18175	0.70	+0.6
3,944,580	+		AMB_RS18175	0.70	-3.5
3,944,580	+		AMB_RS18175	0.70	-0.8
3,944,580	+		AMB_RS18175	0.70	-1.4
3,944,581	-		AMB_RS18175	0.70	-0.4
3,944,581	-		AMB_RS18175	0.70	-1.8
3,944,581	-		AMB_RS18175	0.70	-1.4
3,944,778	+		AMB_RS18175	0.89	-2.8
3,944,778	+		AMB_RS18175	0.89	-0.7
3,944,778	+		AMB_RS18175	0.89	+0.2
3,944,779	-		AMB_RS18175	0.89	-1.1
3,944,779	-		AMB_RS18175	0.89	-1.2
3,944,779	-		AMB_RS18175	0.89	+1.3
3,944,779	-		AMB_RS18175	0.89	-0.8
3,944,779	-		AMB_RS18175	0.89	-2.3
3,944,779	-		AMB_RS18175	0.89	-2.2
3,944,779	-		AMB_RS18175	0.89	-0.5
3,944,780	+		AMB_RS18175	0.89	-2.5
3,944,780	+		AMB_RS18175	0.89	-1.7
3,944,780	+		AMB_RS18175	0.89	-2.4
3,944,781	-		AMB_RS18175	0.89	-0.1
3,944,872	-				-1.2
3,944,872	-				+0.5
3,944,872	-				-2.3
3,944,872	-				-1.2
3,944,883	+				-2.6
3,944,884	-				+0.0
3,944,884	-				+0.6
3,944,884	-				+0.2
3,944,970	+				-1.3
3,944,970	+				-2.2
3,944,970	+				-0.1
3,944,971	-				-1.0
3,944,971	-				-0.7
3,944,971	-				+1.3
3,944,971	-				+0.2
3,944,971	-				-0.9
3,944,971	-				-1.7
3,945,095	-		AMB_RS18180	0.11	-0.4
3,945,124	+		AMB_RS18180	0.13	-2.5
3,945,124	+		AMB_RS18180	0.13	-0.9
3,945,124	+		AMB_RS18180	0.13	-3.9
3,945,124	+		AMB_RS18180	0.13	-2.8
3,945,124	+		AMB_RS18180	0.13	+0.1
3,945,125	-		AMB_RS18180	0.13	-1.2
3,945,125	-		AMB_RS18180	0.13	+4.0
3,945,125	-		AMB_RS18180	0.13	+0.6
3,945,125	-		AMB_RS18180	0.13	-0.3
3,945,125	-		AMB_RS18180	0.13	-2.6
3,945,125	-		AMB_RS18180	0.13	-0.4
3,945,125	-		AMB_RS18180	0.13	-0.6
3,945,181	+		AMB_RS18180	0.18	+0.2
3,945,182	-		AMB_RS18180	0.18	+0.1
3,945,187	+		AMB_RS18180	0.18	+0.4
3,945,187	+		AMB_RS18180	0.18	-0.4
3,945,187	+		AMB_RS18180	0.18	+1.6
3,945,188	-		AMB_RS18180	0.18	+0.1
3,945,188	-		AMB_RS18180	0.18	-0.8
3,945,215	-		AMB_RS18180	0.20	-0.4
3,945,215	-		AMB_RS18180	0.20	-1.5
3,945,316	+		AMB_RS18180	0.29	-1.5
3,945,317	-		AMB_RS18180	0.29	+0.1
3,945,317	-		AMB_RS18180	0.29	-1.0
3,945,332	-		AMB_RS18180	0.30	-0.2
3,945,385	+		AMB_RS18180	0.34	-2.3
3,945,385	+		AMB_RS18180	0.34	-1.7
3,945,386	-		AMB_RS18180	0.34	-1.0
3,945,387	+		AMB_RS18180	0.34	-0.9
3,945,388	-		AMB_RS18180	0.34	-0.0
3,945,409	+		AMB_RS18180	0.36	-2.6
3,945,409	+		AMB_RS18180	0.36	-0.6
3,945,410	-		AMB_RS18180	0.36	+0.6
3,945,515	-		AMB_RS18180	0.45	-1.5
3,945,548	-		AMB_RS18180	0.47	+0.6
3,945,652	+		AMB_RS18180	0.56	-1.5
3,945,652	+		AMB_RS18180	0.56	+0.6
3,945,653	-		AMB_RS18180	0.56	-3.8
3,945,653	-		AMB_RS18180	0.56	-0.9
3,945,659	-		AMB_RS18180	0.56	-0.1
3,945,741	+		AMB_RS18180	0.63	-0.5
3,945,742	-		AMB_RS18180	0.63	-0.5
3,945,742	-		AMB_RS18180	0.63	-1.2
3,945,742	-		AMB_RS18180	0.63	-1.4
3,945,742	-		AMB_RS18180	0.63	-0.7
3,945,910	+		AMB_RS18180	0.77	-0.4
3,945,910	+		AMB_RS18180	0.77	-2.5
3,945,910	+		AMB_RS18180	0.77	-2.3
3,945,910	+		AMB_RS18180	0.77	-0.9
3,945,911	-		AMB_RS18180	0.77	-0.9
3,945,911	-		AMB_RS18180	0.77	+0.1
3,945,911	-		AMB_RS18180	0.77	-0.4
3,945,911	-		AMB_RS18180	0.77	+4.1
3,945,911	-		AMB_RS18180	0.77	+1.2
3,945,911	-		AMB_RS18180	0.77	+0.4
3,945,934	+		AMB_RS18180	0.78	-0.6
3,945,935	-		AMB_RS18180	0.79	+4.6
3,945,935	-		AMB_RS18180	0.79	-1.1
3,945,935	-		AMB_RS18180	0.79	-3.5
3,945,935	-		AMB_RS18180	0.79	+4.6
3,945,937	+		AMB_RS18180	0.79	-2.4
3,945,937	+		AMB_RS18180	0.79	-2.5
3,945,937	+		AMB_RS18180	0.79	-0.6
3,945,937	+		AMB_RS18180	0.79	-0.1
3,945,937	+		AMB_RS18180	0.79	-0.6
3,945,937	+		AMB_RS18180	0.79	+1.6
3,945,937	+		AMB_RS18180	0.79	-0.9
3,945,938	-		AMB_RS18180	0.79	-3.1
3,945,938	-		AMB_RS18180	0.79	-0.5
3,945,938	-		AMB_RS18180	0.79	-0.4
3,945,938	-		AMB_RS18180	0.79	-0.6
3,945,938	-		AMB_RS18180	0.79	-0.3
3,946,111	+				-3.1
3,946,112	-				-2.6
3,946,112	-				-1.0
3,946,112	-				-1.5
3,946,112	-				-0.7
3,946,156	+				+0.6
3,946,156	+				-0.7
3,946,156	+				+0.0
3,946,156	+				-0.3
3,946,156	+				-0.5
3,946,156	+				+1.1
3,946,157	-				-1.4
3,946,158	+				-1.4
3,946,240	+				-1.5
3,946,241	-				-0.4
3,946,241	-				+0.2
3,946,247	+				-0.4
3,946,336	+				+0.2
3,946,336	+				+1.1
3,946,337	-				-0.9
3,946,337	-				-1.2
3,946,337	-				+1.1
3,946,337	-				-1.0
3,946,337	-				-0.2
3,946,337	-				+0.3
3,946,684	+		AMB_RS18185	0.51	-0.1
3,946,684	+		AMB_RS18185	0.51	-0.4
3,946,684	+		AMB_RS18185	0.51	-0.7
3,946,684	+		AMB_RS18185	0.51	-1.8
3,946,685	-		AMB_RS18185	0.51	-0.7
3,946,685	-		AMB_RS18185	0.51	-0.7
3,946,723	+		AMB_RS18185	0.55	-0.2
3,946,940	-		AMB_RS18185	0.82	+1.6
3,946,940	-		AMB_RS18185	0.82	+0.2
3,946,940	-		AMB_RS18185	0.82	+0.6
3,946,940	-		AMB_RS18185	0.82	-0.6
3,947,065	+				-0.7
3,947,065	+				-0.6
3,947,065	+				-0.4
3,947,066	-				+0.1
3,947,090	-				-2.3
3,947,090	-				-1.2