Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17955

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
3,898,238	+				+0.6
3,898,238	+				+0.1
3,898,238	+				-0.8
3,898,239	-				-2.4
3,898,284	+		AMB_RS17945	0.16	-2.0
3,898,284	+		AMB_RS17945	0.16	-1.4
3,898,284	+		AMB_RS17945	0.16	+0.0
3,898,284	+		AMB_RS17945	0.16	-1.2
3,898,285	-		AMB_RS17945	0.17	+0.6
3,898,378	-		AMB_RS17945	0.65	-0.4
3,898,444	+				-1.3
3,898,444	+				+0.8
3,898,611	-				-1.2
3,898,626	+				+0.6
3,898,631	+				-1.2
3,898,631	+				-1.4
3,898,631	+				-3.0
3,898,631	+				+0.1
3,898,632	-				-0.6
3,898,639	-				+0.6
3,898,644	-				-0.4
3,898,644	-				-1.2
3,898,705	-				-0.4
3,898,727	-				+0.0
3,898,766	+				-0.7
3,898,766	+				-1.4
3,898,766	+				-0.6
3,898,767	-				+0.7
3,898,767	-				-1.0
3,898,767	-				-0.2
3,898,767	-				-0.4
3,898,767	-				+0.6
3,898,854	-		AMB_RS17950	0.24	-0.6
3,899,170	-				+0.3
3,899,229	+				-0.5
3,899,229	+				-0.7
3,899,230	-				-1.7
3,899,230	-				-0.7
3,899,230	-				-0.4
3,899,230	-				-2.1
3,899,230	-				+0.5
3,899,230	-				-2.1
3,899,230	-				+0.1
3,899,230	-				+0.6
3,899,230	-				-0.6
3,899,230	-				-0.1
3,899,230	-				+0.4
3,899,379	+				-0.4
3,899,379	+				-2.1
3,899,380	-				-2.2
3,899,466	+		AMB_RS17955	0.11	+0.1
3,899,466	+		AMB_RS17955	0.11	-1.7
3,899,466	+		AMB_RS17955	0.11	-1.0
3,899,466	+		AMB_RS17955	0.11	+0.6
3,899,466	+		AMB_RS17955	0.11	-0.7
3,899,466	+		AMB_RS17955	0.11	-1.1
3,899,466	+		AMB_RS17955	0.11	-2.2
3,899,466	+		AMB_RS17955	0.11	-0.4
3,899,466	+		AMB_RS17955	0.11	+0.8
3,899,467	-		AMB_RS17955	0.11	-3.0
3,899,467	-		AMB_RS17955	0.11	+0.7
3,899,467	-		AMB_RS17955	0.11	+0.5
3,899,467	-		AMB_RS17955	0.11	+0.0
3,899,467	-		AMB_RS17955	0.11	+0.9
3,899,467	-		AMB_RS17955	0.11	+0.6
3,899,542	-		AMB_RS17955	0.14	-0.7
3,899,542	-		AMB_RS17955	0.14	+0.6
3,899,568	+		AMB_RS17955	0.15	+0.9
3,899,568	+		AMB_RS17955	0.15	+0.3
3,899,568	+		AMB_RS17955	0.15	-1.0
3,899,568	+		AMB_RS17955	0.15	-2.2
3,899,569	-		AMB_RS17955	0.15	-3.2
3,899,569	-		AMB_RS17955	0.15	-0.2
3,899,676	+		AMB_RS17955	0.20	-2.9
3,899,676	+		AMB_RS17955	0.20	-0.1
3,899,676	+		AMB_RS17955	0.20	+0.9
3,899,676	+		AMB_RS17955	0.20	-2.1
3,899,676	+		AMB_RS17955	0.20	-2.1
3,899,676	+		AMB_RS17955	0.20	-0.9
3,899,676	+		AMB_RS17955	0.20	+0.6
3,899,677	-		AMB_RS17955	0.20	+0.6
3,899,677	-		AMB_RS17955	0.20	-1.7
3,899,677	-		AMB_RS17955	0.20	-1.8
3,899,677	-		AMB_RS17955	0.20	+0.6
3,899,802	+		AMB_RS17955	0.25	+0.7
3,899,802	+		AMB_RS17955	0.25	+0.0
3,899,802	+		AMB_RS17955	0.25	+1.8
3,899,803	-		AMB_RS17955	0.25	-1.0
3,899,803	-		AMB_RS17955	0.25	-1.5
3,899,803	-		AMB_RS17955	0.25	-0.3
3,899,803	-		AMB_RS17955	0.25	+0.0
3,899,803	-		AMB_RS17955	0.25	-1.2
3,899,804	+		AMB_RS17955	0.25	-0.2
3,899,804	+		AMB_RS17955	0.25	-1.5
3,899,804	+		AMB_RS17955	0.25	+0.5
3,899,804	+		AMB_RS17955	0.25	-1.2
3,899,804	+		AMB_RS17955	0.25	-3.4
3,899,804	+		AMB_RS17955	0.25	-2.3
3,899,805	-		AMB_RS17955	0.25	-3.4
3,899,805	-		AMB_RS17955	0.25	-3.4
3,899,805	-		AMB_RS17955	0.25	-0.4
3,899,805	-		AMB_RS17955	0.25	+0.5
3,899,821	-		AMB_RS17955	0.26	-0.2
3,899,821	-		AMB_RS17955	0.26	+0.8
3,899,898	+		AMB_RS17955	0.29	+0.6
3,899,898	+		AMB_RS17955	0.29	+0.6
3,899,898	+		AMB_RS17955	0.29	-0.5
3,899,899	-		AMB_RS17955	0.29	-2.6
3,899,899	-		AMB_RS17955	0.29	+0.2
3,899,899	-		AMB_RS17955	0.29	-0.7
3,900,061	-		AMB_RS17955	0.37	-0.7
3,900,090	+		AMB_RS17955	0.38	-1.3
3,900,091	-		AMB_RS17955	0.38	-0.4
3,900,091	-		AMB_RS17955	0.38	+0.0
3,900,091	-		AMB_RS17955	0.38	+0.6
3,900,138	+		AMB_RS17955	0.40	+0.2
3,900,168	+		AMB_RS17955	0.41	-1.4
3,900,168	+		AMB_RS17955	0.41	-1.0
3,900,222	+		AMB_RS17955	0.44	-3.1
3,900,223	-		AMB_RS17955	0.44	-0.2
3,900,223	-		AMB_RS17955	0.44	-1.5
3,900,223	-		AMB_RS17955	0.44	-0.6
3,900,223	-		AMB_RS17955	0.44	+0.9
3,900,319	-		AMB_RS17955	0.48	+0.1
3,900,319	-		AMB_RS17955	0.48	-0.4
3,900,319	-		AMB_RS17955	0.48	-0.8
3,900,387	+		AMB_RS17955	0.51	+0.3
3,900,388	-		AMB_RS17955	0.51	+1.9
3,900,388	-		AMB_RS17955	0.51	-2.7
3,900,388	-		AMB_RS17955	0.51	-0.7
3,900,498	+		AMB_RS17955	0.56	-0.3
3,900,498	+		AMB_RS17955	0.56	+1.2
3,900,498	+		AMB_RS17955	0.56	-1.6
3,900,498	+		AMB_RS17955	0.56	+0.1
3,900,498	+		AMB_RS17955	0.56	-0.1
3,900,498	+		AMB_RS17955	0.56	-2.8
3,900,499	-		AMB_RS17955	0.56	-1.0
3,900,499	-		AMB_RS17955	0.56	-0.2
3,900,499	-		AMB_RS17955	0.56	-1.2
3,900,499	-		AMB_RS17955	0.56	-0.3
3,900,519	+		AMB_RS17955	0.57	-1.3
3,900,519	+		AMB_RS17955	0.57	+0.8
3,900,519	+		AMB_RS17955	0.57	-1.4
3,900,520	-		AMB_RS17955	0.57	-2.1
3,900,520	-		AMB_RS17955	0.57	-0.7
3,900,520	-		AMB_RS17955	0.57	-2.7
3,900,520	-		AMB_RS17955	0.57	-2.2
3,900,594	+		AMB_RS17955	0.60	+0.4
3,900,594	+		AMB_RS17955	0.60	-0.4
3,900,595	-		AMB_RS17955	0.60	+1.6
3,900,666	+		AMB_RS17955	0.63	-3.3
3,900,666	+		AMB_RS17955	0.63	-0.7
3,900,667	-		AMB_RS17955	0.63	+0.6
3,900,687	+		AMB_RS17955	0.64	-1.2
3,900,688	-		AMB_RS17955	0.64	-0.7
3,900,829	+		AMB_RS17955	0.70	-0.7
3,900,830	-		AMB_RS17955	0.70	-1.0
3,900,840	+		AMB_RS17955	0.71	-2.3
3,900,840	+		AMB_RS17955	0.71	-0.3
3,900,840	+		AMB_RS17955	0.71	-2.0
3,900,840	+		AMB_RS17955	0.71	-1.2
3,900,840	+		AMB_RS17955	0.71	-1.2
3,900,840	+		AMB_RS17955	0.71	+1.6
3,900,841	-		AMB_RS17955	0.71	-0.8
3,900,841	-		AMB_RS17955	0.71	-0.9
3,900,841	-		AMB_RS17955	0.71	+0.0
3,900,912	+		AMB_RS17955	0.74	-0.3
3,901,035	+		AMB_RS17955	0.79	+0.1
3,901,035	+		AMB_RS17955	0.79	-1.2
3,901,035	+		AMB_RS17955	0.79	-0.6
3,901,035	+		AMB_RS17955	0.79	-2.7
3,901,035	+		AMB_RS17955	0.79	-1.0
3,901,035	+		AMB_RS17955	0.79	-0.6
3,901,036	-		AMB_RS17955	0.79	+0.6
3,901,036	-		AMB_RS17955	0.79	+1.3
3,901,036	-		AMB_RS17955	0.79	-3.3
3,901,036	-		AMB_RS17955	0.79	-0.5
3,901,036	-		AMB_RS17955	0.79	+0.5
3,901,036	-		AMB_RS17955	0.79	-0.7
3,901,036	-		AMB_RS17955	0.79	+0.3
3,901,137	+		AMB_RS17955	0.84	+0.6
3,901,137	+		AMB_RS17955	0.84	-0.4
3,901,137	+		AMB_RS17955	0.84	-0.8
3,901,137	+		AMB_RS17955	0.84	-0.4
3,901,138	-		AMB_RS17955	0.84	-0.2
3,901,138	-		AMB_RS17955	0.84	+1.6
3,901,138	-		AMB_RS17955	0.84	-0.5
3,901,138	-		AMB_RS17955	0.84	+0.2
3,901,138	-		AMB_RS17955	0.84	+0.2
3,901,245	+		AMB_RS17955	0.88	-1.9
3,901,246	-		AMB_RS17955	0.88	-1.5
3,901,326	+				-1.7
3,901,327	-				+0.0
3,901,327	-				-0.8
3,901,446	+				+0.6
3,901,446	+				-1.2
3,901,446	+				+0.2
3,901,446	+				-0.7
3,901,446	+				+0.0
3,901,447	-				-0.7
3,901,447	-				-2.1
3,901,447	-				-2.3
3,901,447	-				-0.6
3,901,447	-				-1.2
3,901,449	+				-1.2
3,901,449	+				-0.2
3,901,506	+				+1.6
3,901,507	-				-0.5
3,901,507	-				+0.3
3,901,507	-				+1.5
3,901,507	-				-1.2
3,901,733	+		AMB_RS17960	0.18	-1.5
3,901,733	+		AMB_RS17960	0.18	+0.8
3,901,733	+		AMB_RS17960	0.18	+0.0
3,901,734	-		AMB_RS17960	0.18	+0.0
3,901,734	-		AMB_RS17960	0.18	-1.0
3,901,734	-		AMB_RS17960	0.18	-0.1
3,901,734	-		AMB_RS17960	0.18	-0.7
3,901,734	-		AMB_RS17960	0.18	-1.4
3,901,734	-		AMB_RS17960	0.18	-0.6
3,901,878	+		AMB_RS17960	0.30	+1.8
3,901,878	+		AMB_RS17960	0.30	+0.8
3,901,878	+		AMB_RS17960	0.30	+0.5
3,901,879	-		AMB_RS17960	0.30	+0.7
3,901,879	-		AMB_RS17960	0.30	+1.6
3,901,879	-		AMB_RS17960	0.30	+1.6
3,901,879	-		AMB_RS17960	0.30	-0.0
3,901,879	-		AMB_RS17960	0.30	-1.2
3,901,881	-		AMB_RS17960	0.31	+0.4
3,902,358	+		AMB_RS17960	0.71	-0.7
3,902,358	+		AMB_RS17960	0.71	-0.4
3,902,358	+		AMB_RS17960	0.71	-0.7
3,902,358	+		AMB_RS17960	0.71	-0.7
3,902,358	+		AMB_RS17960	0.71	+0.3
3,902,359	-		AMB_RS17960	0.71	-1.5
3,902,359	-		AMB_RS17960	0.71	+1.1