Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17145

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17140 and AMB_RS17145 overlap by 4 nucleotidesAMB_RS17145 and AMB_RS17150 overlap by 1 nucleotides AMB_RS17140: AMB_RS17140 - threonine synthase, at 3,682,309 to 3,683,712 _RS17140 AMB_RS17145: AMB_RS17145 - insulinase family protein, at 3,683,709 to 3,684,971 _RS17145 AMB_RS17150: AMB_RS17150 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,684,971 to 3,686,338 _RS17150 Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3683.776 kb on + strandat 3683.946 kb on + strand, within AMB_RS17145at 3683.973 kb on + strand, within AMB_RS17145at 3683.973 kb on + strand, within AMB_RS17145at 3683.973 kb on + strand, within AMB_RS17145at 3683.973 kb on + strand, within AMB_RS17145at 3684.234 kb on + strand, within AMB_RS17145at 3684.375 kb on + strand, within AMB_RS17145at 3684.450 kb on + strand, within AMB_RS17145at 3684.465 kb on + strand, within AMB_RS17145at 3684.465 kb on + strand, within AMB_RS17145at 3684.555 kb on + strand, within AMB_RS17145at 3684.555 kb on + strand, within AMB_RS17145at 3684.564 kb on + strand, within AMB_RS17145at 3684.798 kb on + strand, within AMB_RS17145at 3684.798 kb on + strand, within AMB_RS17145

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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3,683,776 + -2.0
3,683,946 + AMB_RS17145 0.19 -0.0
3,683,973 + AMB_RS17145 0.21 -2.4
3,683,973 + AMB_RS17145 0.21 -2.8
3,683,973 + AMB_RS17145 0.21 +3.6
3,683,973 + AMB_RS17145 0.21 -0.1
3,684,234 + AMB_RS17145 0.42 -0.4
3,684,375 + AMB_RS17145 0.53 -2.3
3,684,450 + AMB_RS17145 0.59 +1.6
3,684,465 + AMB_RS17145 0.60 +1.6
3,684,465 + AMB_RS17145 0.60 -1.2
3,684,555 + AMB_RS17145 0.67 -1.6
3,684,555 + AMB_RS17145 0.67 +0.6
3,684,564 + AMB_RS17145 0.68 -0.7
3,684,798 + AMB_RS17145 0.86 -0.7
3,684,798 + AMB_RS17145 0.86 -0.7

Or see this region's nucleotide sequence