Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16670

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
3,581,272	+		AMB_RS16665	0.16	+0.1
3,581,272	+		AMB_RS16665	0.16	-1.9
3,581,272	+		AMB_RS16665	0.16	-2.3
3,581,272	+		AMB_RS16665	0.16	-0.4
3,581,272	+		AMB_RS16665	0.16	-0.4
3,581,272	+		AMB_RS16665	0.16	+2.2
3,581,272	+		AMB_RS16665	0.16	+0.0
3,581,272	+		AMB_RS16665	0.16	+0.0
3,581,273	-		AMB_RS16665	0.16	-1.0
3,581,295	+		AMB_RS16665	0.18	+1.6
3,581,295	+		AMB_RS16665	0.18	-2.1
3,581,296	-		AMB_RS16665	0.18	+0.6
3,581,391	+		AMB_RS16665	0.27	-0.7
3,581,391	+		AMB_RS16665	0.27	+0.0
3,581,392	-		AMB_RS16665	0.27	+0.0
3,581,401	+		AMB_RS16665	0.27	-3.1
3,581,402	-		AMB_RS16665	0.28	-0.9
3,581,402	-		AMB_RS16665	0.28	-0.4
3,581,402	-		AMB_RS16665	0.28	+0.5
3,581,428	+		AMB_RS16665	0.30	-0.6
3,581,429	-		AMB_RS16665	0.30	-2.1
3,581,518	+		AMB_RS16665	0.38	-0.4
3,581,527	-		AMB_RS16665	0.39	-0.7
3,581,576	+		AMB_RS16665	0.44	+0.2
3,581,576	+		AMB_RS16665	0.44	+0.6
3,581,576	+		AMB_RS16665	0.44	+0.0
3,581,576	+		AMB_RS16665	0.44	+0.1
3,581,576	+		AMB_RS16665	0.44	+0.5
3,581,576	+		AMB_RS16665	0.44	-2.1
3,581,576	+		AMB_RS16665	0.44	+0.2
3,581,577	-		AMB_RS16665	0.44	+0.0
3,581,577	-		AMB_RS16665	0.44	+1.7
3,581,577	-		AMB_RS16665	0.44	-0.6
3,581,620	+		AMB_RS16665	0.48	-0.4
3,581,620	+		AMB_RS16665	0.48	-0.4
3,581,621	-		AMB_RS16665	0.48	-0.2
3,581,621	-		AMB_RS16665	0.48	-0.1
3,581,621	-		AMB_RS16665	0.48	-1.0
3,581,621	-		AMB_RS16665	0.48	-2.2
3,581,621	-		AMB_RS16665	0.48	-2.3
3,581,621	-		AMB_RS16665	0.48	-0.2
3,581,621	-		AMB_RS16665	0.48	-0.8
3,581,621	-		AMB_RS16665	0.48	-1.6
3,581,677	+		AMB_RS16665	0.53	+0.0
3,581,677	+		AMB_RS16665	0.53	-0.7
3,581,678	-		AMB_RS16665	0.53	-0.7
3,581,678	-		AMB_RS16665	0.53	+0.1
3,581,678	-		AMB_RS16665	0.53	-0.1
3,581,678	-		AMB_RS16665	0.53	-0.4
3,581,678	-		AMB_RS16665	0.53	-1.5
3,581,678	-		AMB_RS16665	0.53	+0.5
3,581,678	-		AMB_RS16665	0.53	-1.2
3,581,678	-		AMB_RS16665	0.53	-0.0
3,581,757	-		AMB_RS16665	0.60	-2.7
3,581,757	-		AMB_RS16665	0.60	-0.8
3,581,757	-		AMB_RS16665	0.60	-0.2
3,581,763	+		AMB_RS16665	0.61	-1.4
3,581,763	+		AMB_RS16665	0.61	+0.4
3,581,836	+		AMB_RS16665	0.67	-2.5
3,581,837	-		AMB_RS16665	0.68	-2.8
3,581,918	+		AMB_RS16665	0.75	-0.4
3,581,983	+		AMB_RS16665	0.81	-1.0
3,581,983	+		AMB_RS16665	0.81	-1.4
3,581,984	-		AMB_RS16665	0.81	-0.7
3,581,984	-		AMB_RS16665	0.81	-1.9
3,581,984	-		AMB_RS16665	0.81	-0.8
3,582,006	+		AMB_RS16665	0.83	-1.7
3,582,007	-		AMB_RS16665	0.83	-1.2
3,582,012	+		AMB_RS16665	0.84	+0.2
3,582,013	-		AMB_RS16665	0.84	+0.0
3,582,198	-				-1.1
3,582,198	-				-0.7
3,582,298	+				+0.1
3,582,298	+				-0.5
3,582,298	+				-2.9
3,582,298	+				-0.7
3,582,298	+				-0.7
3,582,298	+				-0.3
3,582,298	+				+1.6
3,582,299	-				-0.7
3,582,299	-				+0.0
3,582,299	-				-0.0
3,582,299	-				+0.3
3,582,302	+				-0.7
3,582,302	+				-4.8
3,582,303	-				+0.1
3,582,303	-				-1.0
3,582,303	-				-2.9
3,582,303	-				-3.0
3,582,303	-				+1.6
3,582,303	-				-2.0
3,582,303	-				-3.0
3,582,303	-				-1.4
3,582,370	+				+1.6
3,582,370	+				-1.6
3,582,370	+				-0.4
3,582,370	+				-0.7
3,582,370	+				-1.9
3,582,370	+				-0.0
3,582,371	-				-1.0
3,582,371	-				-0.2
3,582,371	-				+0.5
3,582,371	-				+0.0
3,582,371	-				+0.6
3,582,371	-				-0.4
3,582,371	-				+0.6
3,582,371	-				-1.9
3,582,371	-				+1.0
3,582,371	-				+0.2
3,582,371	-				+0.6
3,582,478	+		AMB_RS16670	0.17	+1.1
3,582,478	+		AMB_RS16670	0.17	-0.7
3,582,478	+		AMB_RS16670	0.17	-1.3
3,582,478	+		AMB_RS16670	0.17	-0.7
3,582,479	-		AMB_RS16670	0.17	-1.7
3,582,479	-		AMB_RS16670	0.17	-1.7
3,582,479	-		AMB_RS16670	0.17	-2.0
3,582,479	-		AMB_RS16670	0.17	-0.4
3,582,479	-		AMB_RS16670	0.17	-1.7
3,582,479	-		AMB_RS16670	0.17	-0.3
3,582,714	+		AMB_RS16670	0.34	-0.7
3,582,714	+		AMB_RS16670	0.34	+0.5
3,582,715	-		AMB_RS16670	0.34	-1.5
3,582,782	+		AMB_RS16670	0.39	-0.3
3,582,783	-		AMB_RS16670	0.39	-0.5
3,582,839	+		AMB_RS16670	0.43	+0.2
3,582,839	+		AMB_RS16670	0.43	+0.2
3,582,840	-		AMB_RS16670	0.43	-0.7
3,582,840	-		AMB_RS16670	0.43	-1.7
3,582,840	-		AMB_RS16670	0.43	-2.3
3,583,043	+		AMB_RS16670	0.57	-0.3
3,583,438	+		AMB_RS16670	0.85	+0.1
3,583,438	+		AMB_RS16670	0.85	-2.4
3,583,652	-				-0.4
3,583,652	-				-1.2
3,583,657	+				+0.2
3,583,657	+				-2.9
3,583,658	-				-0.1
3,583,729	+				+1.1
3,583,730	-				-4.5
3,583,765	+		AMB_RS16675	0.14	-0.6
3,583,765	+		AMB_RS16675	0.14	+0.6
3,583,765	+		AMB_RS16675	0.14	+2.2
3,583,766	-		AMB_RS16675	0.14	-0.7
3,583,772	+		AMB_RS16675	0.15	-0.1
3,583,852	+		AMB_RS16675	0.24	-0.7
3,583,852	+		AMB_RS16675	0.24	-0.3
3,583,852	+		AMB_RS16675	0.24	-0.3
3,583,853	-		AMB_RS16675	0.24	+0.0
3,583,891	+		AMB_RS16675	0.29	+0.0
3,583,891	+		AMB_RS16675	0.29	-0.7
3,583,892	-		AMB_RS16675	0.29	+0.1
3,583,901	-		AMB_RS16675	0.30	-0.9
3,583,901	-		AMB_RS16675	0.30	-0.6
3,584,048	+		AMB_RS16675	0.47	-0.6
3,584,048	+		AMB_RS16675	0.47	-0.3
3,584,048	+		AMB_RS16675	0.47	+0.6
3,584,049	-		AMB_RS16675	0.47	-0.4
3,584,049	-		AMB_RS16675	0.47	-0.5
3,584,049	-		AMB_RS16675	0.47	-0.5
3,584,049	-		AMB_RS16675	0.47	-1.2
3,584,049	-		AMB_RS16675	0.47	+0.4
3,584,120	-		AMB_RS16675	0.55	-1.4
3,584,120	-		AMB_RS16675	0.55	-3.5
3,584,143	+		AMB_RS16675	0.58	-0.2
3,584,143	+		AMB_RS16675	0.58	-0.5
3,584,143	+		AMB_RS16675	0.58	-0.6
3,584,144	-		AMB_RS16675	0.58	-0.3
3,584,170	+		AMB_RS16675	0.61	-0.3
3,584,170	+		AMB_RS16675	0.61	+0.3
3,584,171	-		AMB_RS16675	0.61	-0.1
3,584,195	+		AMB_RS16675	0.64	-0.7
3,584,195	+		AMB_RS16675	0.64	-3.3
3,584,218	+		AMB_RS16675	0.67	-2.6
3,584,218	+		AMB_RS16675	0.67	-0.9
3,584,311	+		AMB_RS16675	0.78	-0.6
3,584,312	-		AMB_RS16675	0.78	-0.6
3,584,408	+		AMB_RS16675	0.89	+0.2
3,584,410	+		AMB_RS16675	0.89	-1.9
3,584,410	+		AMB_RS16675	0.89	+0.4
3,584,410	+		AMB_RS16675	0.89	-3.3
3,584,410	+		AMB_RS16675	0.89	+0.0
3,584,410	+		AMB_RS16675	0.89	+0.6
3,584,410	+		AMB_RS16675	0.89	-1.9
3,584,410	+		AMB_RS16675	0.89	-0.6
3,584,410	+		AMB_RS16675	0.89	-2.6
3,584,410	+		AMB_RS16675	0.89	-1.7
3,584,410	+		AMB_RS16675	0.89	-0.4
3,584,411	-		AMB_RS16675	0.89	+1.9
3,584,411	-		AMB_RS16675	0.89	+0.0
3,584,411	-		AMB_RS16675	0.89	+0.0
3,584,411	-		AMB_RS16675	0.89	-0.4