Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16450

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
3,519,359	+		AMB_RS16445	0.23	+0.6
3,519,359	+		AMB_RS16445	0.23	-1.0
3,519,359	+		AMB_RS16445	0.23	-0.7
3,519,359	+		AMB_RS16445	0.23	-0.7
3,519,359	+		AMB_RS16445	0.23	-0.1
3,519,359	+		AMB_RS16445	0.23	-0.7
3,519,360	-		AMB_RS16445	0.23	+1.6
3,519,360	-		AMB_RS16445	0.23	-0.7
3,519,360	-		AMB_RS16445	0.23	-0.4
3,519,360	-		AMB_RS16445	0.23	+0.2
3,519,360	-		AMB_RS16445	0.23	-1.0
3,519,360	-		AMB_RS16445	0.23	+0.6
3,519,360	-		AMB_RS16445	0.23	-0.1
3,519,379	+		AMB_RS16445	0.26	+0.2
3,519,379	+		AMB_RS16445	0.26	-0.2
3,519,379	+		AMB_RS16445	0.26	+0.6
3,519,380	-		AMB_RS16445	0.26	+0.3
3,519,380	-		AMB_RS16445	0.26	-0.5
3,519,475	+		AMB_RS16445	0.37	+0.6
3,519,527	+		AMB_RS16445	0.43	+0.1
3,519,527	+		AMB_RS16445	0.43	+1.2
3,519,528	-		AMB_RS16445	0.43	+0.6
3,519,528	-		AMB_RS16445	0.43	-1.4
3,519,566	+		AMB_RS16445	0.48	+0.6
3,519,566	+		AMB_RS16445	0.48	-3.3
3,519,566	+		AMB_RS16445	0.48	-2.9
3,519,566	+		AMB_RS16445	0.48	+0.6
3,519,566	+		AMB_RS16445	0.48	+0.6
3,519,567	-		AMB_RS16445	0.48	-1.9
3,519,567	-		AMB_RS16445	0.48	+0.6
3,519,567	-		AMB_RS16445	0.48	-1.2
3,519,567	-		AMB_RS16445	0.48	-0.7
3,519,567	-		AMB_RS16445	0.48	+0.0
3,519,567	-		AMB_RS16445	0.48	+0.1
3,519,567	-		AMB_RS16445	0.48	-1.0
3,519,631	-		AMB_RS16445	0.55	+0.5
3,519,719	-		AMB_RS16445	0.65	-2.6
3,519,719	-		AMB_RS16445	0.65	-1.7
3,520,010	+				+0.0
3,520,057	+				+0.9
3,520,057	+				-0.3
3,520,057	+				-1.4
3,520,058	-				-1.2
3,520,058	-				-0.4
3,520,058	-				+1.7
3,520,091	-				-2.9
3,520,209	-				+1.1
3,520,284	+				+4.4
3,520,284	+				-0.4
3,520,285	-				-2.2
3,520,309	+				-1.0
3,520,309	+				-0.1
3,520,309	+				-0.4
3,520,309	+				-4.5
3,520,309	+				-2.9
3,520,309	+				-1.2
3,520,309	+				-0.7
3,520,309	+				-2.1
3,520,310	-				-1.2
3,520,310	-				-0.5
3,520,310	-				-1.0
3,520,310	-				-2.3
3,520,353	+				-3.1
3,520,354	-				-0.4
3,520,381	+				-0.4
3,520,381	+				-1.5
3,520,399	+				-0.7
3,520,399	+				-0.7
3,520,399	+				+0.0
3,520,399	+				-0.6
3,520,399	+				-1.2
3,520,400	-				+0.3
3,520,400	-				-0.3
3,520,400	-				+0.0
3,520,400	-				-1.4
3,520,400	-				-2.9
3,520,401	+				-0.7
3,520,402	-				-2.3
3,520,402	-				-0.4
3,520,402	-				+1.6
3,520,402	-				-0.7
3,520,402	-				-2.2
3,520,520	-		AMB_RS16450	0.17	-2.2
3,520,622	-		AMB_RS16450	0.24	+0.3
3,520,683	+		AMB_RS16450	0.28	+0.6
3,520,683	+		AMB_RS16450	0.28	-1.2
3,520,683	+		AMB_RS16450	0.28	-1.4
3,520,683	+		AMB_RS16450	0.28	+1.6
3,520,683	+		AMB_RS16450	0.28	-0.5
3,520,683	+		AMB_RS16450	0.28	+0.8
3,520,684	-		AMB_RS16450	0.28	-0.2
3,520,684	-		AMB_RS16450	0.28	-0.1
3,520,684	-		AMB_RS16450	0.28	-0.4
3,520,695	-		AMB_RS16450	0.29	+1.1
3,520,706	-		AMB_RS16450	0.30	+4.4
3,520,849	+		AMB_RS16450	0.40	-1.0
3,520,850	-		AMB_RS16450	0.40	-0.1
3,520,850	-		AMB_RS16450	0.40	+0.1
3,520,850	-		AMB_RS16450	0.40	-1.9
3,520,850	-		AMB_RS16450	0.40	-1.1
3,520,875	+		AMB_RS16450	0.41	-0.3
3,520,875	+		AMB_RS16450	0.41	+4.3
3,520,875	+		AMB_RS16450	0.41	-1.2
3,520,875	+		AMB_RS16450	0.41	+0.0
3,520,875	+		AMB_RS16450	0.41	-1.6
3,520,875	+		AMB_RS16450	0.41	-1.7
3,520,875	+		AMB_RS16450	0.41	-0.3
3,520,876	-		AMB_RS16450	0.41	-1.2
3,520,876	-		AMB_RS16450	0.41	-0.4
3,520,876	-		AMB_RS16450	0.41	-0.3
3,520,876	-		AMB_RS16450	0.41	+0.6
3,520,876	-		AMB_RS16450	0.41	-0.3
3,520,924	-		AMB_RS16450	0.45	+0.1
3,521,028	+		AMB_RS16450	0.52	-0.7
3,521,035	+		AMB_RS16450	0.52	-1.5
3,521,035	+		AMB_RS16450	0.52	-3.6
3,521,035	+		AMB_RS16450	0.52	-0.3
3,521,035	+		AMB_RS16450	0.52	-0.2
3,521,099	-		AMB_RS16450	0.57	-1.3
3,521,165	-		AMB_RS16450	0.61	-1.6
3,521,165	-		AMB_RS16450	0.61	+0.0
3,521,165	-		AMB_RS16450	0.61	-0.0
3,521,166	+		AMB_RS16450	0.61	-0.7
3,521,167	-		AMB_RS16450	0.61	+0.0
3,521,179	+		AMB_RS16450	0.62	-0.9
3,521,179	+		AMB_RS16450	0.62	+0.6
3,521,179	+		AMB_RS16450	0.62	+0.6
3,521,179	+		AMB_RS16450	0.62	-0.8
3,521,179	+		AMB_RS16450	0.62	-0.3
3,521,179	+		AMB_RS16450	0.62	+1.6
3,521,179	+		AMB_RS16450	0.62	-0.7
3,521,180	-		AMB_RS16450	0.62	-2.9
3,521,218	+		AMB_RS16450	0.65	-0.1
3,521,510	-		AMB_RS16450	0.85	+0.4
3,521,527	+		AMB_RS16450	0.86	-0.4
3,521,527	+		AMB_RS16450	0.86	+0.6
3,521,527	+		AMB_RS16450	0.86	-0.7
3,521,527	+		AMB_RS16450	0.86	-2.4
3,521,528	-		AMB_RS16450	0.86	-3.1
3,521,528	-		AMB_RS16450	0.86	-1.4
3,521,528	-		AMB_RS16450	0.86	+0.1
3,521,528	-		AMB_RS16450	0.86	-3.6
3,521,590	+				-0.4
3,521,605	-				-0.7
3,521,704	+				+0.3
3,521,704	+				-0.2
3,521,705	-				-0.4
3,521,705	-				+1.6
3,521,705	-				-1.7
3,521,705	-				+1.0
3,521,988	+		AMB_RS16455	0.58	-1.6
3,522,044	-		AMB_RS16455	0.72	+0.0
3,522,102	+		AMB_RS16455	0.86	-1.1
3,522,103	-		AMB_RS16455	0.86	-0.4
3,522,103	-		AMB_RS16455	0.86	-1.4
3,522,141	-				-0.4
3,522,149	+				-0.4
3,522,151	+				-1.0
3,522,260	-				-0.4
3,522,260	-				-2.0
3,522,260	-				-3.0
3,522,266	+				+0.7
3,522,266	+				-0.7
3,522,266	+				-0.6
3,522,267	-				+0.4
3,522,294	-				+1.1
3,522,294	-				+0.6
3,522,304	+				+0.9
3,522,338	+				+1.2
3,522,339	-				+1.6
3,522,339	-				-2.0
3,522,339	-				-1.4
3,522,339	-				-3.2
3,522,339	-				+0.3
3,522,525	+		AMB_RS16460	0.11	+1.6
3,522,525	+		AMB_RS16460	0.11	-0.4
3,522,525	+		AMB_RS16460	0.11	+0.2
3,522,525	+		AMB_RS16460	0.11	-0.1
3,522,525	+		AMB_RS16460	0.11	-0.4
3,522,526	-		AMB_RS16460	0.12	-1.6
3,522,526	-		AMB_RS16460	0.12	-0.4
3,522,526	-		AMB_RS16460	0.12	-1.7