Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16015

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16010 and AMB_RS16015 overlap by 4 nucleotidesAMB_RS16015 and AMB_RS16020 are separated by 72 nucleotides AMB_RS16010: AMB_RS16010 - pyruvate kinase, at 3,435,376 to 3,436,803 _RS16010 AMB_RS16015: AMB_RS16015 - glycerate kinase, at 3,436,800 to 3,438,080 _RS16015 AMB_RS16020: AMB_RS16020 - tartrate dehydrogenase, at 3,438,153 to 3,439,229 _RS16020 Position (kb) 3436 3437 3438 3439Strain fitness (log2 ratio) -1 0 1at 3438.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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3,438,234 - -1.2

Or see this region's nucleotide sequence