Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15590

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15585 and AMB_RS15590 overlap by 38 nucleotidesAMB_RS15590 and AMB_RS15595 overlap by 35 nucleotides AMB_RS15585: AMB_RS15585 - PAS domain-containing sensor histidine kinase, at 3,345,159 to 3,347,132 _RS15585 AMB_RS15590: AMB_RS15590 - YgiQ family radical SAM protein, at 3,347,095 to 3,349,186 _RS15590 AMB_RS15595: AMB_RS15595 - hypothetical protein, at 3,349,152 to 3,350,150 _RS15595 Position (kb) 3347 3348 3349 3350Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3346.185 kb on - strand, within AMB_RS15585at 3346.230 kb on + strand, within AMB_RS15585at 3346.266 kb on + strand, within AMB_RS15585at 3346.267 kb on - strand, within AMB_RS15585at 3346.437 kb on - strand, within AMB_RS15585at 3346.437 kb on - strand, within AMB_RS15585at 3346.654 kb on + strand, within AMB_RS15585at 3346.655 kb on - strand, within AMB_RS15585at 3346.831 kb on + strand, within AMB_RS15585at 3346.832 kb on - strand, within AMB_RS15585at 3347.104 kb on - strandat 3347.104 kb on - strandat 3347.131 kb on - strandat 3347.137 kb on - strandat 3347.454 kb on + strand, within AMB_RS15590at 3347.454 kb on + strand, within AMB_RS15590at 3347.454 kb on + strand, within AMB_RS15590at 3347.454 kb on + strand, within AMB_RS15590at 3347.454 kb on + strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.455 kb on - strand, within AMB_RS15590at 3347.589 kb on + strand, within AMB_RS15590at 3347.601 kb on + strand, within AMB_RS15590at 3347.601 kb on + strand, within AMB_RS15590at 3347.601 kb on + strand, within AMB_RS15590at 3347.601 kb on + strand, within AMB_RS15590at 3347.602 kb on - strand, within AMB_RS15590at 3347.602 kb on - strand, within AMB_RS15590at 3347.602 kb on - strand, within AMB_RS15590at 3347.659 kb on - strand, within AMB_RS15590at 3347.659 kb on - strand, within AMB_RS15590at 3347.659 kb on - strand, within AMB_RS15590at 3347.659 kb on - strand, within AMB_RS15590at 3347.730 kb on + strand, within AMB_RS15590at 3347.731 kb on - strand, within AMB_RS15590at 3347.731 kb on - strand, within AMB_RS15590at 3347.766 kb on + strand, within AMB_RS15590at 3347.766 kb on + strand, within AMB_RS15590at 3347.767 kb on - strand, within AMB_RS15590at 3347.767 kb on - strand, within AMB_RS15590at 3347.767 kb on - strand, within AMB_RS15590at 3347.793 kb on + strand, within AMB_RS15590at 3347.793 kb on + strand, within AMB_RS15590at 3347.907 kb on + strand, within AMB_RS15590at 3347.908 kb on - strand, within AMB_RS15590at 3347.908 kb on - strand, within AMB_RS15590at 3347.971 kb on + strand, within AMB_RS15590at 3347.971 kb on + strand, within AMB_RS15590at 3347.971 kb on + strand, within AMB_RS15590at 3347.971 kb on + strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3347.972 kb on - strand, within AMB_RS15590at 3348.193 kb on - strand, within AMB_RS15590at 3348.217 kb on - strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.229 kb on - strand, within AMB_RS15590at 3348.229 kb on - strand, within AMB_RS15590at 3348.366 kb on + strand, within AMB_RS15590at 3348.366 kb on + strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.748 kb on - strand, within AMB_RS15590at 3348.748 kb on - strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.835 kb on - strand, within AMB_RS15590at 3348.835 kb on - strand, within AMB_RS15590at 3348.882 kb on - strand, within AMB_RS15590at 3348.882 kb on - strand, within AMB_RS15590at 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.015 kb on - strandat 3349.015 kb on - strandat 3349.015 kb on - strandat 3349.493 kb on - strand, within AMB_RS15595at 3350.160 kb on + strandat 3350.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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3,346,185 - AMB_RS15585 0.52 -1.9
3,346,230 + AMB_RS15585 0.54 -4.5
3,346,266 + AMB_RS15585 0.56 -1.0
3,346,267 - AMB_RS15585 0.56 +0.1
3,346,437 - AMB_RS15585 0.65 -0.5
3,346,437 - AMB_RS15585 0.65 -0.4
3,346,654 + AMB_RS15585 0.76 +0.3
3,346,655 - AMB_RS15585 0.76 -1.4
3,346,831 + AMB_RS15585 0.85 -0.7
3,346,832 - AMB_RS15585 0.85 +0.7
3,347,104 - +0.1
3,347,104 - +0.4
3,347,131 - +0.4
3,347,137 - +1.1
3,347,454 + AMB_RS15590 0.17 -0.1
3,347,454 + AMB_RS15590 0.17 -0.2
3,347,454 + AMB_RS15590 0.17 -0.2
3,347,454 + AMB_RS15590 0.17 -1.9
3,347,454 + AMB_RS15590 0.17 +3.7
3,347,455 - AMB_RS15590 0.17 +0.6
3,347,455 - AMB_RS15590 0.17 -2.0
3,347,455 - AMB_RS15590 0.17 -0.6
3,347,455 - AMB_RS15590 0.17 -0.6
3,347,455 - AMB_RS15590 0.17 -0.9
3,347,455 - AMB_RS15590 0.17 -0.5
3,347,455 - AMB_RS15590 0.17 -1.4
3,347,455 - AMB_RS15590 0.17 -3.3
3,347,455 - AMB_RS15590 0.17 -1.8
3,347,589 + AMB_RS15590 0.24 -1.2
3,347,601 + AMB_RS15590 0.24 +0.1
3,347,601 + AMB_RS15590 0.24 -0.2
3,347,601 + AMB_RS15590 0.24 +0.0
3,347,601 + AMB_RS15590 0.24 +0.2
3,347,602 - AMB_RS15590 0.24 -0.2
3,347,602 - AMB_RS15590 0.24 -0.4
3,347,602 - AMB_RS15590 0.24 +0.2
3,347,659 - AMB_RS15590 0.27 +1.2
3,347,659 - AMB_RS15590 0.27 +0.6
3,347,659 - AMB_RS15590 0.27 -1.2
3,347,659 - AMB_RS15590 0.27 -1.4
3,347,730 + AMB_RS15590 0.30 -2.3
3,347,731 - AMB_RS15590 0.30 -1.2
3,347,731 - AMB_RS15590 0.30 -0.4
3,347,766 + AMB_RS15590 0.32 -2.6
3,347,766 + AMB_RS15590 0.32 -5.1
3,347,767 - AMB_RS15590 0.32 -1.2
3,347,767 - AMB_RS15590 0.32 -2.6
3,347,767 - AMB_RS15590 0.32 +0.7
3,347,793 + AMB_RS15590 0.33 -1.6
3,347,793 + AMB_RS15590 0.33 -2.0
3,347,907 + AMB_RS15590 0.39 -0.1
3,347,908 - AMB_RS15590 0.39 -3.0
3,347,908 - AMB_RS15590 0.39 +0.6
3,347,971 + AMB_RS15590 0.42 +0.1
3,347,971 + AMB_RS15590 0.42 -1.6
3,347,971 + AMB_RS15590 0.42 -1.4
3,347,971 + AMB_RS15590 0.42 -0.7
3,347,972 - AMB_RS15590 0.42 +0.2
3,347,972 - AMB_RS15590 0.42 -0.2
3,347,972 - AMB_RS15590 0.42 -0.0
3,347,972 - AMB_RS15590 0.42 +0.0
3,347,972 - AMB_RS15590 0.42 -1.2
3,347,972 - AMB_RS15590 0.42 +0.2
3,347,972 - AMB_RS15590 0.42 -2.4
3,348,193 - AMB_RS15590 0.52 -1.7
3,348,217 - AMB_RS15590 0.54 +0.8
3,348,228 + AMB_RS15590 0.54 -0.2
3,348,228 + AMB_RS15590 0.54 -1.8
3,348,228 + AMB_RS15590 0.54 +0.8
3,348,228 + AMB_RS15590 0.54 -2.3
3,348,229 - AMB_RS15590 0.54 +0.0
3,348,229 - AMB_RS15590 0.54 -2.1
3,348,366 + AMB_RS15590 0.61 +0.0
3,348,366 + AMB_RS15590 0.61 -0.7
3,348,367 - AMB_RS15590 0.61 -1.4
3,348,367 - AMB_RS15590 0.61 -1.4
3,348,367 - AMB_RS15590 0.61 -0.7
3,348,367 - AMB_RS15590 0.61 +0.4
3,348,748 - AMB_RS15590 0.79 -0.7
3,348,748 - AMB_RS15590 0.79 -2.4
3,348,796 + AMB_RS15590 0.81 +1.6
3,348,796 + AMB_RS15590 0.81 +0.3
3,348,796 + AMB_RS15590 0.81 +0.6
3,348,796 + AMB_RS15590 0.81 -1.7
3,348,796 + AMB_RS15590 0.81 +0.5
3,348,797 - AMB_RS15590 0.81 -0.8
3,348,797 - AMB_RS15590 0.81 -0.4
3,348,797 - AMB_RS15590 0.81 +0.5
3,348,798 + AMB_RS15590 0.81 -1.0
3,348,798 + AMB_RS15590 0.81 -2.6
3,348,798 + AMB_RS15590 0.81 +0.4
3,348,798 + AMB_RS15590 0.81 -1.4
3,348,798 + AMB_RS15590 0.81 -0.6
3,348,798 + AMB_RS15590 0.81 -0.1
3,348,798 + AMB_RS15590 0.81 +1.1
3,348,799 - AMB_RS15590 0.81 +1.6
3,348,799 - AMB_RS15590 0.81 -0.1
3,348,799 - AMB_RS15590 0.81 -0.2
3,348,799 - AMB_RS15590 0.81 -1.0
3,348,799 - AMB_RS15590 0.81 -0.4
3,348,799 - AMB_RS15590 0.81 -1.5
3,348,799 - AMB_RS15590 0.81 +0.0
3,348,832 + AMB_RS15590 0.83 +0.0
3,348,832 + AMB_RS15590 0.83 +0.8
3,348,832 + AMB_RS15590 0.83 -3.4
3,348,832 + AMB_RS15590 0.83 -2.4
3,348,833 - AMB_RS15590 0.83 -2.4
3,348,833 - AMB_RS15590 0.83 -0.8
3,348,833 - AMB_RS15590 0.83 -0.1
3,348,833 - AMB_RS15590 0.83 +0.2
3,348,835 - AMB_RS15590 0.83 +1.6
3,348,835 - AMB_RS15590 0.83 -1.4
3,348,882 - AMB_RS15590 0.85 +0.6
3,348,882 - AMB_RS15590 0.85 -1.0
3,349,014 + -1.0
3,349,014 + -1.4
3,349,014 + -0.6
3,349,014 + +0.0
3,349,014 + -0.4
3,349,015 - -0.4
3,349,015 - +0.6
3,349,015 - -0.7
3,349,493 - AMB_RS15595 0.34 +0.2
3,350,160 + -1.8
3,350,160 + +0.1

Or see this region's nucleotide sequence