Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15505

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15495 and AMB_RS15500 are separated by 11 nucleotidesAMB_RS15500 and AMB_RS15505 are separated by 31 nucleotidesAMB_RS15505 and AMB_RS15510 overlap by 1 nucleotidesAMB_RS15510 and AMB_RS15515 overlap by 8 nucleotides AMB_RS15495: AMB_RS15495 - hypothetical protein, at 3,327,333 to 3,327,830 _RS15495 AMB_RS15500: AMB_RS15500 - ABC transporter ATP-binding protein, at 3,327,842 to 3,328,687 _RS15500 AMB_RS15505: AMB_RS15505 - NapH/MauN family ferredoxin-type protein, at 3,328,719 to 3,329,681 _RS15505 AMB_RS15510: AMB_RS15510 - 4Fe-4S dicluster domain-containing protein, at 3,329,681 to 3,330,445 _RS15510 AMB_RS15515: AMB_RS15515 - nitrous oxide reductase family maturation protein NosD, at 3,330,438 to 3,331,883 _RS15515 Position (kb) 3328 3329 3330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3327.843 kb on + strandat 3327.844 kb on - strandat 3327.844 kb on - strandat 3327.844 kb on - strandat 3327.877 kb on - strandat 3328.536 kb on + strand, within AMB_RS15500at 3328.536 kb on + strand, within AMB_RS15500at 3328.536 kb on + strand, within AMB_RS15500at 3328.720 kb on + strandat 3328.720 kb on + strandat 3328.720 kb on + strandat 3328.720 kb on + strandat 3328.721 kb on - strandat 3328.721 kb on - strandat 3328.721 kb on - strandat 3328.750 kb on + strandat 3328.838 kb on - strand, within AMB_RS15505at 3328.838 kb on - strand, within AMB_RS15505at 3328.921 kb on + strand, within AMB_RS15505at 3328.921 kb on + strand, within AMB_RS15505at 3328.922 kb on - strand, within AMB_RS15505at 3328.922 kb on - strand, within AMB_RS15505at 3328.960 kb on + strand, within AMB_RS15505at 3328.961 kb on - strand, within AMB_RS15505at 3328.961 kb on - strand, within AMB_RS15505at 3329.065 kb on + strand, within AMB_RS15505at 3329.117 kb on + strand, within AMB_RS15505at 3329.117 kb on + strand, within AMB_RS15505at 3329.117 kb on + strand, within AMB_RS15505at 3329.118 kb on - strand, within AMB_RS15505at 3329.155 kb on + strand, within AMB_RS15505at 3329.156 kb on - strand, within AMB_RS15505at 3329.156 kb on - strand, within AMB_RS15505at 3329.156 kb on - strand, within AMB_RS15505at 3329.156 kb on - strand, within AMB_RS15505at 3329.357 kb on - strand, within AMB_RS15505at 3329.620 kb on + strandat 3329.620 kb on + strandat 3329.888 kb on + strand, within AMB_RS15510at 3329.890 kb on - strand, within AMB_RS15510at 3329.890 kb on - strand, within AMB_RS15510at 3330.153 kb on + strand, within AMB_RS15510at 3330.153 kb on + strand, within AMB_RS15510at 3330.153 kb on + strand, within AMB_RS15510at 3330.154 kb on - strand, within AMB_RS15510

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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3,327,843 + -0.8
3,327,844 - -0.3
3,327,844 - +1.6
3,327,844 - -2.1
3,327,877 - -2.8
3,328,536 + AMB_RS15500 0.82 -0.3
3,328,536 + AMB_RS15500 0.82 +0.0
3,328,536 + AMB_RS15500 0.82 -0.7
3,328,720 + -0.1
3,328,720 + +0.1
3,328,720 + -1.1
3,328,720 + -3.5
3,328,721 - -3.1
3,328,721 - -1.2
3,328,721 - -0.1
3,328,750 + -1.2
3,328,838 - AMB_RS15505 0.12 +0.0
3,328,838 - AMB_RS15505 0.12 -4.6
3,328,921 + AMB_RS15505 0.21 -4.1
3,328,921 + AMB_RS15505 0.21 -4.7
3,328,922 - AMB_RS15505 0.21 -1.9
3,328,922 - AMB_RS15505 0.21 -1.2
3,328,960 + AMB_RS15505 0.25 -0.5
3,328,961 - AMB_RS15505 0.25 -1.2
3,328,961 - AMB_RS15505 0.25 -1.0
3,329,065 + AMB_RS15505 0.36 -0.7
3,329,117 + AMB_RS15505 0.41 -2.8
3,329,117 + AMB_RS15505 0.41 -0.4
3,329,117 + AMB_RS15505 0.41 -0.1
3,329,118 - AMB_RS15505 0.41 -2.9
3,329,155 + AMB_RS15505 0.45 -0.4
3,329,156 - AMB_RS15505 0.45 -0.9
3,329,156 - AMB_RS15505 0.45 -2.0
3,329,156 - AMB_RS15505 0.45 +0.1
3,329,156 - AMB_RS15505 0.45 -1.7
3,329,357 - AMB_RS15505 0.66 -1.4
3,329,620 + -1.0
3,329,620 + -2.0
3,329,888 + AMB_RS15510 0.27 -3.2
3,329,890 - AMB_RS15510 0.27 +0.3
3,329,890 - AMB_RS15510 0.27 -0.8
3,330,153 + AMB_RS15510 0.62 -0.7
3,330,153 + AMB_RS15510 0.62 +0.6
3,330,153 + AMB_RS15510 0.62 -1.8
3,330,154 - AMB_RS15510 0.62 -2.8

Or see this region's nucleotide sequence