Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS15495 and AMB_RS15500 are separated by 11 nucleotides AMB_RS15500 and AMB_RS15505 are separated by 31 nucleotides AMB_RS15505 and AMB_RS15510 overlap by 1 nucleotides AMB_RS15510 and AMB_RS15515 overlap by 8 nucleotides
AMB_RS15495: AMB_RS15495 - hypothetical protein, at 3,327,333 to 3,327,830
_RS15495
AMB_RS15500: AMB_RS15500 - ABC transporter ATP-binding protein, at 3,327,842 to 3,328,687
_RS15500
AMB_RS15505: AMB_RS15505 - NapH/MauN family ferredoxin-type protein, at 3,328,719 to 3,329,681
_RS15505
AMB_RS15510: AMB_RS15510 - 4Fe-4S dicluster domain-containing protein, at 3,329,681 to 3,330,445
_RS15510
AMB_RS15515: AMB_RS15515 - nitrous oxide reductase family maturation protein NosD, at 3,330,438 to 3,331,883
_RS15515
Position (kb)
3328
3329
3330 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3327.843 kb on + strand at 3327.844 kb on - strand at 3327.844 kb on - strand at 3327.844 kb on - strand at 3327.877 kb on - strand at 3328.536 kb on + strand, within AMB_RS15500 at 3328.536 kb on + strand, within AMB_RS15500 at 3328.536 kb on + strand, within AMB_RS15500 at 3328.720 kb on + strand at 3328.720 kb on + strand at 3328.720 kb on + strand at 3328.720 kb on + strand at 3328.721 kb on - strand at 3328.721 kb on - strand at 3328.721 kb on - strand at 3328.750 kb on + strand at 3328.838 kb on - strand, within AMB_RS15505 at 3328.838 kb on - strand, within AMB_RS15505 at 3328.921 kb on + strand, within AMB_RS15505 at 3328.921 kb on + strand, within AMB_RS15505 at 3328.922 kb on - strand, within AMB_RS15505 at 3328.922 kb on - strand, within AMB_RS15505 at 3328.960 kb on + strand, within AMB_RS15505 at 3328.961 kb on - strand, within AMB_RS15505 at 3328.961 kb on - strand, within AMB_RS15505 at 3329.065 kb on + strand, within AMB_RS15505 at 3329.117 kb on + strand, within AMB_RS15505 at 3329.117 kb on + strand, within AMB_RS15505 at 3329.117 kb on + strand, within AMB_RS15505 at 3329.118 kb on - strand, within AMB_RS15505 at 3329.155 kb on + strand, within AMB_RS15505 at 3329.156 kb on - strand, within AMB_RS15505 at 3329.156 kb on - strand, within AMB_RS15505 at 3329.156 kb on - strand, within AMB_RS15505 at 3329.156 kb on - strand, within AMB_RS15505 at 3329.357 kb on - strand, within AMB_RS15505 at 3329.620 kb on + strand at 3329.620 kb on + strand at 3329.888 kb on + strand, within AMB_RS15510 at 3329.890 kb on - strand, within AMB_RS15510 at 3329.890 kb on - strand, within AMB_RS15510 at 3330.153 kb on + strand, within AMB_RS15510 at 3330.153 kb on + strand, within AMB_RS15510 at 3330.153 kb on + strand, within AMB_RS15510 at 3330.154 kb on - strand, within AMB_RS15510
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 3,327,843 + -0.8 3,327,844 - -0.3 3,327,844 - +1.6 3,327,844 - -2.1 3,327,877 - -2.8 3,328,536 + AMB_RS15500 0.82 -0.3 3,328,536 + AMB_RS15500 0.82 +0.0 3,328,536 + AMB_RS15500 0.82 -0.7 3,328,720 + -0.1 3,328,720 + +0.1 3,328,720 + -1.1 3,328,720 + -3.5 3,328,721 - -3.1 3,328,721 - -1.2 3,328,721 - -0.1 3,328,750 + -1.2 3,328,838 - AMB_RS15505 0.12 +0.0 3,328,838 - AMB_RS15505 0.12 -4.6 3,328,921 + AMB_RS15505 0.21 -4.1 3,328,921 + AMB_RS15505 0.21 -4.7 3,328,922 - AMB_RS15505 0.21 -1.9 3,328,922 - AMB_RS15505 0.21 -1.2 3,328,960 + AMB_RS15505 0.25 -0.5 3,328,961 - AMB_RS15505 0.25 -1.2 3,328,961 - AMB_RS15505 0.25 -1.0 3,329,065 + AMB_RS15505 0.36 -0.7 3,329,117 + AMB_RS15505 0.41 -2.8 3,329,117 + AMB_RS15505 0.41 -0.4 3,329,117 + AMB_RS15505 0.41 -0.1 3,329,118 - AMB_RS15505 0.41 -2.9 3,329,155 + AMB_RS15505 0.45 -0.4 3,329,156 - AMB_RS15505 0.45 -0.9 3,329,156 - AMB_RS15505 0.45 -2.0 3,329,156 - AMB_RS15505 0.45 +0.1 3,329,156 - AMB_RS15505 0.45 -1.7 3,329,357 - AMB_RS15505 0.66 -1.4 3,329,620 + -1.0 3,329,620 + -2.0 3,329,888 + AMB_RS15510 0.27 -3.2 3,329,890 - AMB_RS15510 0.27 +0.3 3,329,890 - AMB_RS15510 0.27 -0.8 3,330,153 + AMB_RS15510 0.62 -0.7 3,330,153 + AMB_RS15510 0.62 +0.6 3,330,153 + AMB_RS15510 0.62 -1.8 3,330,154 - AMB_RS15510 0.62 -2.8
Or see this region's nucleotide sequence