Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14045

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14040 and AMB_RS14045 are separated by 158 nucleotidesAMB_RS14045 and AMB_RS14050 are separated by 106 nucleotides AMB_RS14040: AMB_RS14040 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,979,762 to 2,981,027 _RS14040 AMB_RS14045: AMB_RS14045 - ATP-dependent Clp endopeptidase, proteolytic subunit ClpP, at 2,981,186 to 2,981,827 _RS14045 AMB_RS14050: AMB_RS14050 - trigger factor, at 2,981,934 to 2,983,322 _RS14050 Position (kb) 2981 2982Strain fitness (log2 ratio) -2 -1 0 1at 2981.077 kb on - strandat 2981.077 kb on - strandat 2981.077 kb on - strandat 2981.896 kb on - strandat 2981.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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2,981,077 - -1.6
2,981,077 - -0.2
2,981,077 - -1.2
2,981,896 - -1.9
2,981,936 - -2.7

Or see this region's nucleotide sequence