Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13805

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS13795 and AMB_RS13800 are separated by 11 nucleotidesAMB_RS13800 and AMB_RS13805 overlap by 41 nucleotidesAMB_RS13805 and AMB_RS13810 are separated by 347 nucleotides AMB_RS13795: AMB_RS13795 - MCE family protein, at 2,929,491 to 2,929,979 _RS13795 AMB_RS13800: AMB_RS13800 - outer membrane lipid asymmetry maintenance protein MlaD, at 2,929,991 to 2,930,548 _RS13800 AMB_RS13805: AMB_RS13805 - NADH:ubiquinone oxidoreductase subunit NDUFA12, at 2,930,508 to 2,930,858 _RS13805 AMB_RS13810: AMB_RS13810 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 2,931,206 to 2,934,877 _RS13810 Position (kb) 2930 2931Strain fitness (log2 ratio) -2 -1 0 1at 2930.892 kb on - strandat 2931.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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2,930,892 - -2.2
2,931,015 + -1.2

Or see this region's nucleotide sequence