Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11905

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11895 and AMB_RS11900 overlap by 4 nucleotidesAMB_RS11900 and AMB_RS11905 are separated by 143 nucleotidesAMB_RS11905 and AMB_RS11910 are separated by 60 nucleotides AMB_RS11895: AMB_RS11895 - integration host factor subunit alpha, at 2,559,515 to 2,559,835 _RS11895 AMB_RS11900: AMB_RS11900 - MerR family transcriptional regulator, at 2,559,832 to 2,560,386 _RS11900 AMB_RS11905: AMB_RS11905 - tRNA-Pro, at 2,560,530 to 2,560,606 _RS11905 AMB_RS11910: AMB_RS11910 - tetratricopeptide repeat protein, at 2,560,667 to 2,563,063 _RS11910 Position (kb) 2560 2561Strain fitness (log2 ratio) -3 -2 -1 0 1at 2560.653 kb on - strandat 2560.739 kb on + strandat 2560.740 kb on - strandat 2560.784 kb on + strandat 2560.888 kb on + strandat 2561.453 kb on + strand, within AMB_RS11910at 2561.453 kb on + strand, within AMB_RS11910at 2561.497 kb on + strand, within AMB_RS11910at 2561.555 kb on + strand, within AMB_RS11910at 2561.555 kb on + strand, within AMB_RS11910

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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2,560,653 - -1.2
2,560,739 + -2.0
2,560,740 - -2.9
2,560,784 + -1.0
2,560,888 + -0.4
2,561,453 + AMB_RS11910 0.33 -0.9
2,561,453 + AMB_RS11910 0.33 -1.9
2,561,497 + AMB_RS11910 0.35 -0.4
2,561,555 + AMB_RS11910 0.37 +0.1
2,561,555 + AMB_RS11910 0.37 +0.3

Or see this region's nucleotide sequence