Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11725

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11715 and AMB_RS11720 are separated by 13 nucleotidesAMB_RS11720 and AMB_RS11725 are separated by 28 nucleotidesAMB_RS11725 and AMB_RS11730 are separated by 13 nucleotides AMB_RS11715: AMB_RS11715 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, at 2,521,604 to 2,522,887 _RS11715 AMB_RS11720: AMB_RS11720 - hypothetical protein, at 2,522,901 to 2,523,479 _RS11720 AMB_RS11725: AMB_RS11725 - hypothetical protein, at 2,523,508 to 2,523,975 _RS11725 AMB_RS11730: AMB_RS11730 - dihydrolipoyl dehydrogenase, at 2,523,989 to 2,525,377 _RS11730 Position (kb) 2523 2524Strain fitness (log2 ratio) -3 -2 -1 0 1at 2523.414 kb on + strand, within AMB_RS11720at 2523.787 kb on + strand, within AMB_RS11725at 2523.787 kb on + strand, within AMB_RS11725at 2523.787 kb on + strand, within AMB_RS11725at 2523.787 kb on + strand, within AMB_RS11725at 2523.787 kb on + strand, within AMB_RS11725at 2523.856 kb on + strand, within AMB_RS11725at 2523.919 kb on + strand, within AMB_RS11725

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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2,523,414 + AMB_RS11720 0.89 -3.7
2,523,787 + AMB_RS11725 0.60 -0.4
2,523,787 + AMB_RS11725 0.60 -2.8
2,523,787 + AMB_RS11725 0.60 +0.0
2,523,787 + AMB_RS11725 0.60 +0.6
2,523,787 + AMB_RS11725 0.60 -1.4
2,523,856 + AMB_RS11725 0.74 -1.0
2,523,919 + AMB_RS11725 0.88 +0.7

Or see this region's nucleotide sequence