Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS08245 and AMB_RS08250 are separated by 232 nucleotides AMB_RS08250 and AMB_RS08255 are separated by 127 nucleotides AMB_RS08255 and AMB_RS08260 are separated by 13 nucleotides
AMB_RS08245: AMB_RS08245 - site-specific integrase, at 1,768,239 to 1,768,820
_RS08245
AMB_RS08250: AMB_RS08250 - site-specific DNA methylase, at 1,769,053 to 1,769,883
_RS08250
AMB_RS08255: AMB_RS08255 - hypothetical protein, at 1,770,011 to 1,770,403
_RS08255
AMB_RS08260: AMB_RS08260 - hypothetical protein, at 1,770,417 to 1,770,614
_RS08260
Position (kb) 1769
1770 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1768.076 kb on - strand at 1768.129 kb on + strand at 1768.132 kb on - strand at 1768.482 kb on + strand, within AMB_RS08245 at 1768.482 kb on + strand, within AMB_RS08245 at 1768.482 kb on + strand, within AMB_RS08245 at 1768.482 kb on + strand, within AMB_RS08245 at 1768.610 kb on + strand, within AMB_RS08245 at 1768.657 kb on - strand, within AMB_RS08245 at 1768.657 kb on - strand, within AMB_RS08245 at 1769.124 kb on + strand at 1769.124 kb on + strand at 1769.125 kb on - strand at 1769.125 kb on - strand at 1769.125 kb on - strand at 1769.225 kb on + strand, within AMB_RS08250 at 1769.226 kb on - strand, within AMB_RS08250 at 1769.253 kb on + strand, within AMB_RS08250 at 1769.253 kb on + strand, within AMB_RS08250 at 1769.254 kb on - strand, within AMB_RS08250 at 1769.254 kb on - strand, within AMB_RS08250 at 1769.255 kb on + strand, within AMB_RS08250 at 1769.255 kb on + strand, within AMB_RS08250 at 1769.255 kb on + strand, within AMB_RS08250 at 1769.255 kb on + strand, within AMB_RS08250 at 1769.256 kb on - strand, within AMB_RS08250 at 1769.256 kb on - strand, within AMB_RS08250 at 1769.256 kb on - strand, within AMB_RS08250 at 1769.256 kb on - strand, within AMB_RS08250 at 1769.345 kb on + strand, within AMB_RS08250 at 1769.345 kb on + strand, within AMB_RS08250 at 1769.346 kb on - strand, within AMB_RS08250 at 1769.346 kb on - strand, within AMB_RS08250 at 1769.346 kb on - strand, within AMB_RS08250 at 1769.346 kb on - strand, within AMB_RS08250 at 1769.375 kb on + strand, within AMB_RS08250 at 1769.391 kb on - strand, within AMB_RS08250 at 1769.392 kb on + strand, within AMB_RS08250 at 1769.392 kb on + strand, within AMB_RS08250 at 1769.393 kb on - strand, within AMB_RS08250 at 1769.393 kb on - strand, within AMB_RS08250 at 1769.443 kb on + strand, within AMB_RS08250 at 1769.443 kb on + strand, within AMB_RS08250 at 1769.443 kb on + strand, within AMB_RS08250 at 1769.444 kb on - strand, within AMB_RS08250 at 1769.540 kb on + strand, within AMB_RS08250 at 1769.541 kb on - strand, within AMB_RS08250 at 1769.597 kb on + strand, within AMB_RS08250 at 1769.597 kb on + strand, within AMB_RS08250 at 1769.597 kb on + strand, within AMB_RS08250 at 1769.597 kb on + strand, within AMB_RS08250 at 1769.597 kb on + strand, within AMB_RS08250 at 1769.598 kb on - strand, within AMB_RS08250 at 1769.598 kb on - strand, within AMB_RS08250 at 1769.598 kb on - strand, within AMB_RS08250 at 1769.603 kb on + strand, within AMB_RS08250 at 1769.603 kb on + strand, within AMB_RS08250 at 1769.603 kb on + strand, within AMB_RS08250 at 1769.604 kb on - strand, within AMB_RS08250 at 1769.604 kb on - strand, within AMB_RS08250 at 1769.604 kb on - strand, within AMB_RS08250 at 1769.621 kb on + strand, within AMB_RS08250 at 1769.622 kb on - strand, within AMB_RS08250 at 1769.872 kb on - strand at 1769.872 kb on - strand at 1769.909 kb on + strand at 1769.937 kb on + strand at 1770.110 kb on - strand, within AMB_RS08255 at 1770.343 kb on + strand, within AMB_RS08255 at 1770.344 kb on - strand, within AMB_RS08255 at 1770.406 kb on - strand at 1770.406 kb on - strand at 1770.406 kb on - strand at 1770.592 kb on - strand, within AMB_RS08260 at 1770.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,768,076 - -1.3 1,768,129 + -0.0 1,768,132 - -0.4 1,768,482 + AMB_RS08245 0.42 -1.2 1,768,482 + AMB_RS08245 0.42 -1.8 1,768,482 + AMB_RS08245 0.42 -1.6 1,768,482 + AMB_RS08245 0.42 -0.8 1,768,610 + AMB_RS08245 0.64 +0.6 1,768,657 - AMB_RS08245 0.72 -0.8 1,768,657 - AMB_RS08245 0.72 -0.2 1,769,124 + -0.0 1,769,124 + -1.0 1,769,125 - -0.4 1,769,125 - +0.9 1,769,125 - -0.0 1,769,225 + AMB_RS08250 0.21 -0.0 1,769,226 - AMB_RS08250 0.21 -0.1 1,769,253 + AMB_RS08250 0.24 -0.3 1,769,253 + AMB_RS08250 0.24 -0.3 1,769,254 - AMB_RS08250 0.24 -3.1 1,769,254 - AMB_RS08250 0.24 -0.8 1,769,255 + AMB_RS08250 0.24 -1.0 1,769,255 + AMB_RS08250 0.24 -1.8 1,769,255 + AMB_RS08250 0.24 -0.8 1,769,255 + AMB_RS08250 0.24 -2.0 1,769,256 - AMB_RS08250 0.24 -2.5 1,769,256 - AMB_RS08250 0.24 -0.4 1,769,256 - AMB_RS08250 0.24 -0.2 1,769,256 - AMB_RS08250 0.24 +0.6 1,769,345 + AMB_RS08250 0.35 -1.2 1,769,345 + AMB_RS08250 0.35 +0.0 1,769,346 - AMB_RS08250 0.35 -0.6 1,769,346 - AMB_RS08250 0.35 -1.0 1,769,346 - AMB_RS08250 0.35 +0.1 1,769,346 - AMB_RS08250 0.35 -0.7 1,769,375 + AMB_RS08250 0.39 +0.6 1,769,391 - AMB_RS08250 0.41 -0.0 1,769,392 + AMB_RS08250 0.41 -3.2 1,769,392 + AMB_RS08250 0.41 -0.0 1,769,393 - AMB_RS08250 0.41 -0.2 1,769,393 - AMB_RS08250 0.41 -0.1 1,769,443 + AMB_RS08250 0.47 -0.7 1,769,443 + AMB_RS08250 0.47 -1.2 1,769,443 + AMB_RS08250 0.47 -0.8 1,769,444 - AMB_RS08250 0.47 -2.2 1,769,540 + AMB_RS08250 0.59 -0.4 1,769,541 - AMB_RS08250 0.59 -3.6 1,769,597 + AMB_RS08250 0.65 +4.3 1,769,597 + AMB_RS08250 0.65 -0.6 1,769,597 + AMB_RS08250 0.65 -1.0 1,769,597 + AMB_RS08250 0.65 -0.5 1,769,597 + AMB_RS08250 0.65 +0.1 1,769,598 - AMB_RS08250 0.66 +0.7 1,769,598 - AMB_RS08250 0.66 -0.4 1,769,598 - AMB_RS08250 0.66 -1.0 1,769,603 + AMB_RS08250 0.66 -0.8 1,769,603 + AMB_RS08250 0.66 -0.8 1,769,603 + AMB_RS08250 0.66 +0.6 1,769,604 - AMB_RS08250 0.66 -1.9 1,769,604 - AMB_RS08250 0.66 +0.6 1,769,604 - AMB_RS08250 0.66 -1.6 1,769,621 + AMB_RS08250 0.68 -3.5 1,769,622 - AMB_RS08250 0.68 -3.0 1,769,872 - -1.0 1,769,872 - +0.3 1,769,909 + -1.6 1,769,937 + -0.4 1,770,110 - AMB_RS08255 0.25 -1.9 1,770,343 + AMB_RS08255 0.84 -4.6 1,770,344 - AMB_RS08255 0.85 +0.6 1,770,406 - +0.4 1,770,406 - -0.7 1,770,406 - +0.6 1,770,592 - AMB_RS08260 0.88 +0.9 1,770,826 - -0.0
Or see this region's nucleotide sequence