Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07995 and AMB_RS08000 are separated by 2 nucleotides AMB_RS08000 and AMB_RS08005 overlap by 137 nucleotides AMB_RS08005 and AMB_RS08010 are separated by 114 nucleotides AMB_RS08010 and AMB_RS08015 are separated by 26 nucleotides
AMB_RS07995: AMB_RS07995 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A, at 1,714,838 to 1,716,310
_RS07995
AMB_RS08000: AMB_RS08000 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 1,716,313 to 1,716,600
_RS08000
AMB_RS08005: AMB_RS08005 - hypothetical protein, at 1,716,464 to 1,717,438
_RS08005
AMB_RS08010: AMB_RS08010 - N(2)-fixation sustaining protein CowN, at 1,717,553 to 1,717,849
_RS08010
AMB_RS08015: AMB_RS08015 - Holliday junction resolvase RuvX, at 1,717,876 to 1,718,343
_RS08015
Position (kb) 1716
1717
1718 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1716.315 kb on - strand at 1716.641 kb on - strand, within AMB_RS08005 at 1716.641 kb on - strand, within AMB_RS08005 at 1716.752 kb on + strand, within AMB_RS08005 at 1716.753 kb on - strand, within AMB_RS08005 at 1717.105 kb on + strand, within AMB_RS08005 at 1717.193 kb on + strand, within AMB_RS08005 at 1717.193 kb on + strand, within AMB_RS08005 at 1717.193 kb on + strand, within AMB_RS08005 at 1717.193 kb on + strand, within AMB_RS08005 at 1717.194 kb on - strand, within AMB_RS08005 at 1717.580 kb on + strand at 1717.582 kb on + strand at 1717.582 kb on + strand at 1717.583 kb on - strand, within AMB_RS08010 at 1717.664 kb on + strand, within AMB_RS08010 at 1717.766 kb on + strand, within AMB_RS08010 at 1717.766 kb on + strand, within AMB_RS08010 at 1717.766 kb on + strand, within AMB_RS08010 at 1717.769 kb on + strand, within AMB_RS08010 at 1717.770 kb on - strand, within AMB_RS08010 at 1717.863 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,716,315 - -3.4 1,716,641 - AMB_RS08005 0.18 -0.0 1,716,641 - AMB_RS08005 0.18 -0.4 1,716,752 + AMB_RS08005 0.30 -0.8 1,716,753 - AMB_RS08005 0.30 -0.3 1,717,105 + AMB_RS08005 0.66 -0.0 1,717,193 + AMB_RS08005 0.75 +0.6 1,717,193 + AMB_RS08005 0.75 +0.1 1,717,193 + AMB_RS08005 0.75 -0.3 1,717,193 + AMB_RS08005 0.75 +1.1 1,717,194 - AMB_RS08005 0.75 +1.1 1,717,580 + -0.7 1,717,582 + -0.0 1,717,582 + -0.0 1,717,583 - AMB_RS08010 0.10 -1.4 1,717,664 + AMB_RS08010 0.37 -0.8 1,717,766 + AMB_RS08010 0.72 -0.4 1,717,766 + AMB_RS08010 0.72 -2.1 1,717,766 + AMB_RS08010 0.72 -0.7 1,717,769 + AMB_RS08010 0.73 -0.0 1,717,770 - AMB_RS08010 0.73 -2.0 1,717,863 + +0.4
Or see this region's nucleotide sequence