Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07915

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07910 and AMB_RS07915 are separated by 145 nucleotidesAMB_RS07915 and AMB_RS07920 are separated by 180 nucleotidesAMB_RS07920 and AMB_RS07925 are separated by 100 nucleotides AMB_RS07910: AMB_RS07910 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 1,697,214 to 1,698,596 _RS07910 AMB_RS07915: AMB_RS07915 - hypothetical protein, at 1,698,742 to 1,699,971 _RS07915 AMB_RS07920: AMB_RS07920 - N-acetyltransferase, at 1,700,152 to 1,700,670 _RS07920 AMB_RS07925: AMB_RS07925 - nitrogenase molybdenum-iron protein subunit beta, at 1,700,771 to 1,702,306 _RS07925 Position (kb) 1698 1699 1700Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1697.786 kb on - strand, within AMB_RS07910at 1697.999 kb on - strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910at 1698.274 kb on + strand, within AMB_RS07910at 1698.274 kb on + strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.341 kb on - strand, within AMB_RS07910at 1698.368 kb on + strand, within AMB_RS07910at 1698.611 kb on - strandat 1698.611 kb on - strandat 1698.650 kb on - strandat 1698.653 kb on - strandat 1698.743 kb on + strandat 1698.744 kb on - strandat 1699.214 kb on + strand, within AMB_RS07915at 1699.214 kb on + strand, within AMB_RS07915at 1699.226 kb on + strand, within AMB_RS07915at 1699.227 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915at 1699.716 kb on - strand, within AMB_RS07915at 1699.716 kb on - strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.749 kb on - strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.854 kb on - strandat 1699.854 kb on - strandat 1700.085 kb on - strandat 1700.121 kb on + strandat 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.357 kb on - strand, within AMB_RS07920at 1700.365 kb on + strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.787 kb on + strandat 1700.788 kb on - strandat 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.964 kb on + strand, within AMB_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,697,786 - AMB_RS07910 0.41 +0.1
1,697,999 - AMB_RS07910 0.57 -0.8
1,698,011 + AMB_RS07910 0.58 -0.6
1,698,011 + AMB_RS07910 0.58 -2.4
1,698,011 + AMB_RS07910 0.58 +0.6
1,698,012 - AMB_RS07910 0.58 -1.0
1,698,012 - AMB_RS07910 0.58 -0.1
1,698,274 + AMB_RS07910 0.77 +0.4
1,698,274 + AMB_RS07910 0.77 +0.4
1,698,275 - AMB_RS07910 0.77 +0.1
1,698,275 - AMB_RS07910 0.77 -0.8
1,698,275 - AMB_RS07910 0.77 -1.2
1,698,275 - AMB_RS07910 0.77 -1.8
1,698,341 - AMB_RS07910 0.81 -1.6
1,698,368 + AMB_RS07910 0.83 -1.4
1,698,611 - -0.6
1,698,611 - +0.5
1,698,650 - -1.4
1,698,653 - -0.0
1,698,743 + -0.9
1,698,744 - -2.0
1,699,214 + AMB_RS07915 0.38 +0.6
1,699,214 + AMB_RS07915 0.38 -1.3
1,699,226 + AMB_RS07915 0.39 +1.6
1,699,227 - AMB_RS07915 0.39 +2.6
1,699,596 - AMB_RS07915 0.69 -1.0
1,699,596 - AMB_RS07915 0.69 +0.6
1,699,716 - AMB_RS07915 0.79 -1.3
1,699,716 - AMB_RS07915 0.79 -1.4
1,699,748 + AMB_RS07915 0.82 -2.8
1,699,748 + AMB_RS07915 0.82 -3.9
1,699,748 + AMB_RS07915 0.82 +0.4
1,699,748 + AMB_RS07915 0.82 -2.7
1,699,749 - AMB_RS07915 0.82 -2.8
1,699,769 + AMB_RS07915 0.83 -0.0
1,699,769 + AMB_RS07915 0.83 +0.1
1,699,769 + AMB_RS07915 0.83 +0.6
1,699,769 + AMB_RS07915 0.83 +0.6
1,699,769 + AMB_RS07915 0.83 +0.3
1,699,769 + AMB_RS07915 0.83 -1.0
1,699,769 + AMB_RS07915 0.83 -1.8
1,699,769 + AMB_RS07915 0.83 -2.0
1,699,770 - AMB_RS07915 0.84 +1.1
1,699,770 - AMB_RS07915 0.84 -1.4
1,699,770 - AMB_RS07915 0.84 -0.0
1,699,770 - AMB_RS07915 0.84 -0.4
1,699,770 - AMB_RS07915 0.84 -1.0
1,699,770 - AMB_RS07915 0.84 -1.3
1,699,770 - AMB_RS07915 0.84 -1.8
1,699,770 - AMB_RS07915 0.84 -1.0
1,699,770 - AMB_RS07915 0.84 -0.6
1,699,772 + AMB_RS07915 0.84 +0.1
1,699,772 + AMB_RS07915 0.84 -0.4
1,699,772 + AMB_RS07915 0.84 -1.4
1,699,772 + AMB_RS07915 0.84 -1.0
1,699,772 + AMB_RS07915 0.84 +0.2
1,699,772 + AMB_RS07915 0.84 -0.4
1,699,772 + AMB_RS07915 0.84 +0.6
1,699,772 + AMB_RS07915 0.84 -1.3
1,699,772 + AMB_RS07915 0.84 -0.4
1,699,773 - AMB_RS07915 0.84 -1.4
1,699,773 - AMB_RS07915 0.84 -2.8
1,699,773 - AMB_RS07915 0.84 +1.6
1,699,854 - -2.1
1,699,854 - -0.0
1,700,085 - -0.4
1,700,121 + -0.7
1,700,356 + AMB_RS07920 0.39 -0.8
1,700,356 + AMB_RS07920 0.39 -0.1
1,700,356 + AMB_RS07920 0.39 +0.2
1,700,357 - AMB_RS07920 0.39 -1.5
1,700,365 + AMB_RS07920 0.41 -0.3
1,700,366 - AMB_RS07920 0.41 -0.8
1,700,366 - AMB_RS07920 0.41 +0.6
1,700,787 + -2.3
1,700,788 - -0.8
1,700,955 + AMB_RS07925 0.12 -1.5
1,700,955 + AMB_RS07925 0.12 -0.2
1,700,955 + AMB_RS07925 0.12 -1.4
1,700,955 + AMB_RS07925 0.12 -1.3
1,700,956 - AMB_RS07925 0.12 -0.4
1,700,956 - AMB_RS07925 0.12 +0.2
1,700,956 - AMB_RS07925 0.12 -2.4
1,700,956 - AMB_RS07925 0.12 -0.3
1,700,956 - AMB_RS07925 0.12 -1.6
1,700,964 + AMB_RS07925 0.13 +0.4

Or see this region's nucleotide sequence