Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07525

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07515 and AMB_RS07520 are separated by 72 nucleotidesAMB_RS07520 and AMB_RS07525 are separated by 13 nucleotidesAMB_RS07525 and AMB_RS07530 are separated by 292 nucleotides AMB_RS07515: AMB_RS07515 - aldehyde ferredoxin oxidoreductase, at 1,627,435 to 1,629,144 _RS07515 AMB_RS07520: AMB_RS07520 - hypothetical protein, at 1,629,217 to 1,629,891 _RS07520 AMB_RS07525: AMB_RS07525 - sigma-70 family RNA polymerase sigma factor, at 1,629,905 to 1,630,969 _RS07525 AMB_RS07530: AMB_RS07530 - site-specific integrase, at 1,631,262 to 1,632,332 _RS07530 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -3 -2 -1 0 1at 1629.142 kb on + strandat 1629.143 kb on - strandat 1629.626 kb on - strand, within AMB_RS07520at 1629.626 kb on - strand, within AMB_RS07520at 1629.626 kb on - strand, within AMB_RS07520at 1629.947 kb on + strandat 1629.947 kb on + strandat 1629.948 kb on - strandat 1629.948 kb on - strandat 1629.948 kb on - strandat 1630.074 kb on + strand, within AMB_RS07525at 1630.074 kb on + strand, within AMB_RS07525at 1630.075 kb on - strand, within AMB_RS07525at 1630.386 kb on + strand, within AMB_RS07525at 1630.386 kb on + strand, within AMB_RS07525at 1630.386 kb on + strand, within AMB_RS07525at 1630.387 kb on - strand, within AMB_RS07525at 1630.387 kb on - strand, within AMB_RS07525at 1630.387 kb on - strand, within AMB_RS07525at 1630.387 kb on - strand, within AMB_RS07525at 1630.497 kb on + strand, within AMB_RS07525at 1630.497 kb on + strand, within AMB_RS07525at 1630.497 kb on + strand, within AMB_RS07525at 1630.497 kb on + strand, within AMB_RS07525at 1630.497 kb on + strand, within AMB_RS07525at 1630.498 kb on - strand, within AMB_RS07525at 1630.524 kb on + strand, within AMB_RS07525at 1630.524 kb on + strand, within AMB_RS07525at 1630.524 kb on + strand, within AMB_RS07525at 1630.524 kb on + strand, within AMB_RS07525at 1630.524 kb on + strand, within AMB_RS07525at 1630.582 kb on + strand, within AMB_RS07525at 1630.583 kb on - strand, within AMB_RS07525at 1631.119 kb on + strandat 1631.149 kb on - strandat 1631.149 kb on - strandat 1631.259 kb on - strandat 1631.263 kb on + strandat 1631.264 kb on - strandat 1631.264 kb on - strandat 1631.266 kb on - strandat 1631.266 kb on - strandat 1631.318 kb on - strandat 1631.357 kb on - strandat 1631.357 kb on - strandat 1631.418 kb on + strand, within AMB_RS07530at 1631.418 kb on + strand, within AMB_RS07530at 1631.419 kb on - strand, within AMB_RS07530at 1631.419 kb on - strand, within AMB_RS07530at 1631.419 kb on - strand, within AMB_RS07530at 1631.506 kb on + strand, within AMB_RS07530at 1631.519 kb on - strand, within AMB_RS07530at 1631.612 kb on + strand, within AMB_RS07530at 1631.874 kb on + strand, within AMB_RS07530at 1631.875 kb on - strand, within AMB_RS07530at 1631.920 kb on + strand, within AMB_RS07530at 1631.920 kb on + strand, within AMB_RS07530at 1631.921 kb on - strand, within AMB_RS07530at 1631.921 kb on - strand, within AMB_RS07530at 1631.921 kb on - strand, within AMB_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,629,142 + -2.4
1,629,143 - -1.8
1,629,626 - AMB_RS07520 0.61 -1.1
1,629,626 - AMB_RS07520 0.61 -3.3
1,629,626 - AMB_RS07520 0.61 -0.4
1,629,947 + -1.3
1,629,947 + -1.3
1,629,948 - -0.8
1,629,948 - -3.3
1,629,948 - -0.8
1,630,074 + AMB_RS07525 0.16 -1.3
1,630,074 + AMB_RS07525 0.16 -2.1
1,630,075 - AMB_RS07525 0.16 -0.0
1,630,386 + AMB_RS07525 0.45 -0.8
1,630,386 + AMB_RS07525 0.45 +1.5
1,630,386 + AMB_RS07525 0.45 +0.5
1,630,387 - AMB_RS07525 0.45 -0.2
1,630,387 - AMB_RS07525 0.45 -1.3
1,630,387 - AMB_RS07525 0.45 -0.2
1,630,387 - AMB_RS07525 0.45 -0.8
1,630,497 + AMB_RS07525 0.56 -3.1
1,630,497 + AMB_RS07525 0.56 -0.1
1,630,497 + AMB_RS07525 0.56 -0.3
1,630,497 + AMB_RS07525 0.56 -0.1
1,630,497 + AMB_RS07525 0.56 +1.5
1,630,498 - AMB_RS07525 0.56 -0.1
1,630,524 + AMB_RS07525 0.58 +0.2
1,630,524 + AMB_RS07525 0.58 -2.5
1,630,524 + AMB_RS07525 0.58 -0.3
1,630,524 + AMB_RS07525 0.58 -1.3
1,630,524 + AMB_RS07525 0.58 -1.1
1,630,582 + AMB_RS07525 0.64 +0.1
1,630,583 - AMB_RS07525 0.64 -0.6
1,631,119 + -1.2
1,631,149 - +0.2
1,631,149 - -1.6
1,631,259 - -0.2
1,631,263 + -1.3
1,631,264 - -0.6
1,631,264 - -1.0
1,631,266 - -0.5
1,631,266 - +1.5
1,631,318 - +0.3
1,631,357 - +0.3
1,631,357 - -3.6
1,631,418 + AMB_RS07530 0.15 +0.3
1,631,418 + AMB_RS07530 0.15 -0.1
1,631,419 - AMB_RS07530 0.15 +0.7
1,631,419 - AMB_RS07530 0.15 -1.8
1,631,419 - AMB_RS07530 0.15 +1.5
1,631,506 + AMB_RS07530 0.23 +1.4
1,631,519 - AMB_RS07530 0.24 -0.8
1,631,612 + AMB_RS07530 0.33 +0.4
1,631,874 + AMB_RS07530 0.57 -1.1
1,631,875 - AMB_RS07530 0.57 -0.4
1,631,920 + AMB_RS07530 0.61 -2.3
1,631,920 + AMB_RS07530 0.61 -0.4
1,631,921 - AMB_RS07530 0.62 +1.5
1,631,921 - AMB_RS07530 0.62 -0.2
1,631,921 - AMB_RS07530 0.62 +1.5

Or see this region's nucleotide sequence