Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07440

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23295 and AMB_RS07435 are separated by 27 nucleotidesAMB_RS07435 and AMB_RS07440 overlap by 14 nucleotidesAMB_RS07440 and AMB_RS07445 are separated by 98 nucleotidesAMB_RS07445 and AMB_RS07450 overlap by 16 nucleotides AMB_RS23295: AMB_RS23295 - cytochrome c, at 1,608,966 to 1,609,970 _RS23295 AMB_RS07435: AMB_RS07435 - hypothetical protein, at 1,609,998 to 1,610,951 _RS07435 AMB_RS07440: AMB_RS07440 - dTDP-4-dehydrorhamnose reductase, at 1,610,938 to 1,611,828 _RS07440 AMB_RS07445: AMB_RS07445 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,611,927 to 1,612,481 _RS07445 AMB_RS07450: AMB_RS07450 - ABC transporter ATP-binding protein, at 1,612,466 to 1,613,170 _RS07450 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1610.060 kb on + strandat 1610.060 kb on + strandat 1610.060 kb on + strandat 1610.060 kb on + strandat 1610.061 kb on - strandat 1610.061 kb on - strandat 1610.076 kb on + strandat 1610.077 kb on - strandat 1610.087 kb on + strandat 1610.087 kb on + strandat 1610.087 kb on + strandat 1610.087 kb on + strandat 1610.087 kb on + strandat 1610.087 kb on + strandat 1610.088 kb on - strandat 1610.088 kb on - strandat 1610.088 kb on - strandat 1610.157 kb on + strand, within AMB_RS07435at 1610.169 kb on + strand, within AMB_RS07435at 1610.169 kb on + strand, within AMB_RS07435at 1610.170 kb on - strand, within AMB_RS07435at 1610.170 kb on - strand, within AMB_RS07435at 1610.314 kb on - strand, within AMB_RS07435at 1610.314 kb on - strand, within AMB_RS07435at 1610.316 kb on + strand, within AMB_RS07435at 1610.316 kb on + strand, within AMB_RS07435at 1610.317 kb on - strand, within AMB_RS07435at 1610.317 kb on - strand, within AMB_RS07435at 1610.317 kb on - strand, within AMB_RS07435at 1610.400 kb on - strand, within AMB_RS07435at 1610.484 kb on + strand, within AMB_RS07435at 1610.484 kb on + strand, within AMB_RS07435at 1610.485 kb on + strand, within AMB_RS07435at 1610.485 kb on - strand, within AMB_RS07435at 1610.485 kb on - strand, within AMB_RS07435at 1610.485 kb on - strand, within AMB_RS07435at 1610.485 kb on - strand, within AMB_RS07435at 1610.541 kb on + strand, within AMB_RS07435at 1610.556 kb on - strand, within AMB_RS07435at 1610.568 kb on + strand, within AMB_RS07435at 1610.569 kb on - strand, within AMB_RS07435at 1610.569 kb on - strand, within AMB_RS07435at 1610.589 kb on + strand, within AMB_RS07435at 1610.590 kb on - strand, within AMB_RS07435at 1610.590 kb on - strand, within AMB_RS07435at 1610.590 kb on - strand, within AMB_RS07435at 1610.592 kb on - strand, within AMB_RS07435at 1610.592 kb on - strand, within AMB_RS07435at 1610.664 kb on + strand, within AMB_RS07435at 1610.665 kb on - strand, within AMB_RS07435at 1610.718 kb on + strand, within AMB_RS07435at 1610.718 kb on + strand, within AMB_RS07435at 1610.745 kb on + strand, within AMB_RS07435at 1610.745 kb on + strand, within AMB_RS07435at 1610.776 kb on - strand, within AMB_RS07435at 1610.776 kb on - strand, within AMB_RS07435at 1610.844 kb on + strand, within AMB_RS07435at 1610.844 kb on + strand, within AMB_RS07435at 1610.845 kb on - strand, within AMB_RS07435at 1610.845 kb on - strand, within AMB_RS07435at 1610.931 kb on + strandat 1610.932 kb on - strandat 1610.940 kb on - strandat 1611.201 kb on - strand, within AMB_RS07440at 1611.201 kb on - strand, within AMB_RS07440at 1611.375 kb on - strand, within AMB_RS07440at 1611.521 kb on + strand, within AMB_RS07440at 1611.522 kb on - strand, within AMB_RS07440at 1611.889 kb on - strandat 1611.897 kb on + strandat 1611.897 kb on + strandat 1611.897 kb on + strandat 1611.898 kb on - strandat 1611.899 kb on + strandat 1611.900 kb on - strandat 1611.901 kb on + strandat 1611.902 kb on - strandat 1611.902 kb on - strandat 1611.902 kb on - strandat 1611.949 kb on + strandat 1611.950 kb on - strandat 1612.155 kb on + strand, within AMB_RS07445at 1612.155 kb on + strand, within AMB_RS07445at 1612.156 kb on - strand, within AMB_RS07445at 1612.156 kb on - strand, within AMB_RS07445at 1612.157 kb on + strand, within AMB_RS07445at 1612.209 kb on + strand, within AMB_RS07445at 1612.209 kb on + strand, within AMB_RS07445at 1612.293 kb on - strand, within AMB_RS07445at 1612.307 kb on + strand, within AMB_RS07445at 1612.307 kb on + strand, within AMB_RS07445at 1612.308 kb on - strand, within AMB_RS07445at 1612.308 kb on - strand, within AMB_RS07445at 1612.320 kb on + strand, within AMB_RS07445at 1612.339 kb on - strand, within AMB_RS07445at 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,610,060 + -1.8
1,610,060 + -0.4
1,610,060 + -0.1
1,610,060 + +0.0
1,610,061 - -1.1
1,610,061 - +0.4
1,610,076 + -0.8
1,610,077 - +1.0
1,610,087 + +0.3
1,610,087 + -0.5
1,610,087 + -0.8
1,610,087 + +1.3
1,610,087 + +0.5
1,610,087 + -2.3
1,610,088 - -3.0
1,610,088 - -0.6
1,610,088 - -2.4
1,610,157 + AMB_RS07435 0.17 -1.3
1,610,169 + AMB_RS07435 0.18 +0.5
1,610,169 + AMB_RS07435 0.18 -0.1
1,610,170 - AMB_RS07435 0.18 -0.1
1,610,170 - AMB_RS07435 0.18 -0.0
1,610,314 - AMB_RS07435 0.33 -0.1
1,610,314 - AMB_RS07435 0.33 -0.1
1,610,316 + AMB_RS07435 0.33 +0.8
1,610,316 + AMB_RS07435 0.33 -1.4
1,610,317 - AMB_RS07435 0.33 -0.1
1,610,317 - AMB_RS07435 0.33 -0.5
1,610,317 - AMB_RS07435 0.33 -1.1
1,610,400 - AMB_RS07435 0.42 -0.8
1,610,484 + AMB_RS07435 0.51 -0.5
1,610,484 + AMB_RS07435 0.51 -1.3
1,610,485 + AMB_RS07435 0.51 +0.0
1,610,485 - AMB_RS07435 0.51 -0.5
1,610,485 - AMB_RS07435 0.51 -0.9
1,610,485 - AMB_RS07435 0.51 -1.3
1,610,485 - AMB_RS07435 0.51 -1.8
1,610,541 + AMB_RS07435 0.57 +0.5
1,610,556 - AMB_RS07435 0.58 -2.9
1,610,568 + AMB_RS07435 0.60 +0.8
1,610,569 - AMB_RS07435 0.60 +0.5
1,610,569 - AMB_RS07435 0.60 +0.0
1,610,589 + AMB_RS07435 0.62 -1.2
1,610,590 - AMB_RS07435 0.62 -1.8
1,610,590 - AMB_RS07435 0.62 -1.3
1,610,590 - AMB_RS07435 0.62 +0.5
1,610,592 - AMB_RS07435 0.62 -1.1
1,610,592 - AMB_RS07435 0.62 -1.1
1,610,664 + AMB_RS07435 0.70 -0.8
1,610,665 - AMB_RS07435 0.70 +0.3
1,610,718 + AMB_RS07435 0.75 -0.8
1,610,718 + AMB_RS07435 0.75 -1.1
1,610,745 + AMB_RS07435 0.78 -0.4
1,610,745 + AMB_RS07435 0.78 -1.3
1,610,776 - AMB_RS07435 0.82 -0.3
1,610,776 - AMB_RS07435 0.82 -1.1
1,610,844 + AMB_RS07435 0.89 +1.2
1,610,844 + AMB_RS07435 0.89 +0.0
1,610,845 - AMB_RS07435 0.89 -1.8
1,610,845 - AMB_RS07435 0.89 +0.5
1,610,931 + -0.7
1,610,932 - +0.4
1,610,940 - -4.5
1,611,201 - AMB_RS07440 0.30 +0.9
1,611,201 - AMB_RS07440 0.30 -3.3
1,611,375 - AMB_RS07440 0.49 -0.6
1,611,521 + AMB_RS07440 0.65 -0.8
1,611,522 - AMB_RS07440 0.66 -1.1
1,611,889 - -0.6
1,611,897 + -1.5
1,611,897 + -3.6
1,611,897 + -1.1
1,611,898 - -1.8
1,611,899 + -1.3
1,611,900 - -0.8
1,611,901 + -1.1
1,611,902 - -0.7
1,611,902 - -0.8
1,611,902 - +0.7
1,611,949 + -1.3
1,611,950 - -0.1
1,612,155 + AMB_RS07445 0.41 -2.2
1,612,155 + AMB_RS07445 0.41 -0.7
1,612,156 - AMB_RS07445 0.41 -1.5
1,612,156 - AMB_RS07445 0.41 -2.4
1,612,157 + AMB_RS07445 0.41 -2.8
1,612,209 + AMB_RS07445 0.51 -1.6
1,612,209 + AMB_RS07445 0.51 -1.8
1,612,293 - AMB_RS07445 0.66 -0.7
1,612,307 + AMB_RS07445 0.68 -3.2
1,612,307 + AMB_RS07445 0.68 -2.9
1,612,308 - AMB_RS07445 0.69 -1.3
1,612,308 - AMB_RS07445 0.69 -1.3
1,612,320 + AMB_RS07445 0.71 -0.5
1,612,339 - AMB_RS07445 0.74 -2.6
1,612,479 + +0.4
1,612,479 + -0.8
1,612,479 + +0.5
1,612,479 + +1.5
1,612,479 + -1.9
1,612,479 + -1.3
1,612,480 - +0.2
1,612,480 - -0.5
1,612,480 - -0.8
1,612,480 - +0.7
1,612,480 - -2.4
1,612,480 - -2.9
1,612,555 + AMB_RS07450 0.13 -0.1
1,612,555 + AMB_RS07450 0.13 -2.3
1,612,555 + AMB_RS07450 0.13 -2.6
1,612,555 + AMB_RS07450 0.13 -0.5
1,612,556 - AMB_RS07450 0.13 -0.8
1,612,556 - AMB_RS07450 0.13 -1.5
1,612,556 - AMB_RS07450 0.13 -0.6
1,612,556 - AMB_RS07450 0.13 -2.1
1,612,556 - AMB_RS07450 0.13 -1.1
1,612,557 + AMB_RS07450 0.13 -1.4
1,612,557 + AMB_RS07450 0.13 -1.1
1,612,557 + AMB_RS07450 0.13 -0.6
1,612,557 + AMB_RS07450 0.13 +0.5
1,612,557 + AMB_RS07450 0.13 -1.3
1,612,557 + AMB_RS07450 0.13 -0.8
1,612,557 + AMB_RS07450 0.13 +0.5
1,612,557 + AMB_RS07450 0.13 +0.5
1,612,557 + AMB_RS07450 0.13 -1.5
1,612,558 - AMB_RS07450 0.13 +0.7
1,612,558 - AMB_RS07450 0.13 -0.7
1,612,558 - AMB_RS07450 0.13 -1.6
1,612,558 - AMB_RS07450 0.13 -0.8

Or see this region's nucleotide sequence