Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07360

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
1,588,871	-				-0.5
1,588,871	-				+0.9
1,588,885	+				-1.1
1,588,885	+				-0.7
1,588,886	-				-0.9
1,588,886	-				-0.5
1,589,113	+		AMB_RS07355	0.33	-0.7
1,589,114	-		AMB_RS07355	0.33	-1.3
1,589,114	-		AMB_RS07355	0.33	-0.6
1,589,227	+		AMB_RS07355	0.48	-1.5
1,589,227	+		AMB_RS07355	0.48	+0.9
1,589,227	+		AMB_RS07355	0.48	-0.8
1,589,228	-		AMB_RS07355	0.48	-0.8
1,589,230	+		AMB_RS07355	0.48	-0.5
1,589,231	-		AMB_RS07355	0.48	-0.5
1,589,245	+		AMB_RS07355	0.50	-1.1
1,589,269	+		AMB_RS07355	0.53	-2.8
1,589,269	+		AMB_RS07355	0.53	-2.3
1,589,270	-		AMB_RS07355	0.53	-2.2
1,589,340	+		AMB_RS07355	0.63	-2.2
1,589,340	+		AMB_RS07355	0.63	-0.2
1,589,341	-		AMB_RS07355	0.63	+0.2
1,589,366	+		AMB_RS07355	0.66	+2.1
1,589,366	+		AMB_RS07355	0.66	-2.3
1,589,366	+		AMB_RS07355	0.66	-0.3
1,589,367	-		AMB_RS07355	0.66	-2.2
1,589,367	-		AMB_RS07355	0.66	-1.5
1,589,368	+		AMB_RS07355	0.67	-1.1
1,589,369	-		AMB_RS07355	0.67	-1.7
1,589,369	-		AMB_RS07355	0.67	+1.2
1,589,369	-		AMB_RS07355	0.67	-1.7
1,589,407	+		AMB_RS07355	0.72	-0.5
1,589,407	+		AMB_RS07355	0.72	+0.8
1,589,408	-		AMB_RS07355	0.72	-0.3
1,589,432	+		AMB_RS07355	0.75	-0.1
1,589,432	+		AMB_RS07355	0.75	-0.6
1,589,432	+		AMB_RS07355	0.75	-0.1
1,589,432	+		AMB_RS07355	0.75	-1.5
1,589,433	-		AMB_RS07355	0.75	-0.3
1,589,434	+		AMB_RS07355	0.75	-0.5
1,589,435	-		AMB_RS07355	0.75	-1.1
1,589,435	-		AMB_RS07355	0.75	-0.0
1,589,476	+		AMB_RS07355	0.81	-0.8
1,589,476	+		AMB_RS07355	0.81	-0.1
1,589,476	+		AMB_RS07355	0.81	-0.8
1,589,476	+		AMB_RS07355	0.81	+1.5
1,589,476	+		AMB_RS07355	0.81	-1.3
1,589,477	-		AMB_RS07355	0.81	-3.1
1,589,477	-		AMB_RS07355	0.81	-2.7
1,589,646	+				+1.0
1,589,706	+				-0.5
1,589,707	-				+0.5
1,589,746	+		AMB_RS07360	0.14	-1.3
1,589,746	+		AMB_RS07360	0.14	+0.5
1,589,746	+		AMB_RS07360	0.14	-1.3
1,589,746	+		AMB_RS07360	0.14	-2.1
1,589,747	-		AMB_RS07360	0.14	-2.1
1,589,747	-		AMB_RS07360	0.14	-1.2
1,589,747	-		AMB_RS07360	0.14	-0.5
1,589,747	-		AMB_RS07360	0.14	-1.8
1,589,781	+		AMB_RS07360	0.19	+0.2
1,589,781	+		AMB_RS07360	0.19	-0.6
1,589,781	+		AMB_RS07360	0.19	-0.8
1,589,781	+		AMB_RS07360	0.19	-0.5
1,589,781	+		AMB_RS07360	0.19	-2.7
1,589,781	+		AMB_RS07360	0.19	-0.5
1,589,781	+		AMB_RS07360	0.19	-0.2
1,589,781	+		AMB_RS07360	0.19	-0.8
1,589,782	-		AMB_RS07360	0.20	-0.1
1,589,782	-		AMB_RS07360	0.20	-1.5
1,589,782	-		AMB_RS07360	0.20	-0.4
1,589,782	-		AMB_RS07360	0.20	-1.3
1,589,782	-		AMB_RS07360	0.20	-1.3
1,589,782	-		AMB_RS07360	0.20	-2.2
1,589,782	-		AMB_RS07360	0.20	-0.5
1,589,920	+		AMB_RS07360	0.41	-0.1
1,589,920	+		AMB_RS07360	0.41	-1.5
1,589,921	-		AMB_RS07360	0.41	-1.5
1,589,921	-		AMB_RS07360	0.41	-0.6
1,589,977	+		AMB_RS07360	0.49	-0.4
1,589,989	+		AMB_RS07360	0.51	-3.1
1,589,989	+		AMB_RS07360	0.51	-0.5
1,589,990	-		AMB_RS07360	0.51	-2.8
1,590,194	+				+0.8
1,590,195	-				-2.3
1,590,195	-				-0.8
1,590,248	+				-0.4
1,590,248	+				-0.2
1,590,248	+				-0.8
1,590,249	-				-0.5
1,590,359	+		AMB_RS07365	0.26	-1.5
1,590,360	-		AMB_RS07365	0.26	-0.5
1,590,379	-		AMB_RS07365	0.29	-0.2
1,590,380	+		AMB_RS07365	0.29	-2.0
1,590,381	-		AMB_RS07365	0.29	-1.7
1,590,381	-		AMB_RS07365	0.29	-1.4
1,590,396	+		AMB_RS07365	0.32	+0.9
1,590,426	-		AMB_RS07365	0.36	-0.1
1,590,434	-		AMB_RS07365	0.38	-0.1
1,590,437	+		AMB_RS07365	0.38	-0.5
1,590,437	+		AMB_RS07365	0.38	-1.5
1,590,438	-		AMB_RS07365	0.38	-2.1
1,590,438	-		AMB_RS07365	0.38	-1.6
1,590,467	+		AMB_RS07365	0.43	-1.8
1,590,467	+		AMB_RS07365	0.43	+0.4
1,590,467	+		AMB_RS07365	0.43	+0.1
1,590,467	+		AMB_RS07365	0.43	+0.2
1,590,467	+		AMB_RS07365	0.43	-1.7
1,590,467	+		AMB_RS07365	0.43	-2.2
1,590,467	+		AMB_RS07365	0.43	+0.3
1,590,467	+		AMB_RS07365	0.43	-2.1
1,590,468	-		AMB_RS07365	0.43	-0.6
1,590,468	-		AMB_RS07365	0.43	+0.5
1,590,468	-		AMB_RS07365	0.43	-1.3
1,590,468	-		AMB_RS07365	0.43	-0.5
1,590,506	+		AMB_RS07365	0.49	-0.8
1,590,506	+		AMB_RS07365	0.49	-0.1
1,590,506	+		AMB_RS07365	0.49	-0.5
1,590,506	+		AMB_RS07365	0.49	-0.2
1,590,506	+		AMB_RS07365	0.49	-0.8
1,590,539	+		AMB_RS07365	0.54	-0.5
1,590,696	-		AMB_RS07365	0.78	-0.8
1,590,696	-		AMB_RS07365	0.78	-0.2
1,590,743	+		AMB_RS07365	0.86	+1.7
1,590,743	+		AMB_RS07365	0.86	+0.5
1,590,744	-		AMB_RS07365	0.86	-0.7
1,590,745	+		AMB_RS07365	0.86	-0.9
1,590,745	+		AMB_RS07365	0.86	-1.1
1,590,746	-		AMB_RS07365	0.86	+0.4
1,590,746	-		AMB_RS07365	0.86	-0.5
1,590,746	-		AMB_RS07365	0.86	-1.1
1,590,746	-		AMB_RS07365	0.86	-2.1
1,590,813	+				-1.3
1,590,834	+				+0.1
1,590,858	+				+0.4
1,590,858	+				-1.1
1,590,893	+				-0.8
1,590,893	+				-0.5
1,590,893	+				-0.8
1,590,893	+				-1.1
1,590,893	+				-0.0
1,590,894	-				+1.5
1,590,894	-				-1.3
1,590,894	-				-1.3
1,590,894	-				+1.5
1,590,894	-				-0.5
1,590,908	+				+0.0
1,590,908	+				-2.0
1,590,909	-		AMB_RS07370	0.10	-0.5
1,590,909	-		AMB_RS07370	0.10	-1.5
1,590,957	+		AMB_RS07370	0.18	-2.8
1,590,957	+		AMB_RS07370	0.18	-0.5
1,590,957	+		AMB_RS07370	0.18	-1.5
1,590,958	-		AMB_RS07370	0.19	-0.1
1,590,958	-		AMB_RS07370	0.19	-2.2
1,590,958	-		AMB_RS07370	0.19	-1.7
1,590,958	-		AMB_RS07370	0.19	-0.1
1,590,958	-		AMB_RS07370	0.19	+0.2
1,591,022	+		AMB_RS07370	0.30	-1.1
1,591,023	-		AMB_RS07370	0.30	-0.1
1,591,182	-		AMB_RS07370	0.57	+0.7