Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07205 and AMB_RS07210 are separated by 120 nucleotides AMB_RS07210 and AMB_RS07215 are separated by 296 nucleotides
AMB_RS07205: AMB_RS07205 - hypothetical protein, at 1,552,186 to 1,553,367
_RS07205
AMB_RS07210: AMB_RS07210 - permease, at 1,553,488 to 1,555,242
_RS07210
AMB_RS07215: AMB_RS07215 - ATP-dependent helicase, at 1,555,539 to 1,556,969
_RS07215
Position (kb) 1553
1554
1555
1556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1552.610 kb on + strand, within AMB_RS07205 at 1552.611 kb on - strand, within AMB_RS07205 at 1552.677 kb on + strand, within AMB_RS07205 at 1552.712 kb on + strand, within AMB_RS07205 at 1552.713 kb on - strand, within AMB_RS07205 at 1552.713 kb on - strand, within AMB_RS07205 at 1552.713 kb on - strand, within AMB_RS07205 at 1553.123 kb on + strand, within AMB_RS07205 at 1553.124 kb on - strand, within AMB_RS07205 at 1553.124 kb on - strand, within AMB_RS07205 at 1553.124 kb on - strand, within AMB_RS07205 at 1553.124 kb on - strand, within AMB_RS07205 at 1553.411 kb on - strand at 1553.453 kb on + strand at 1553.454 kb on - strand at 1553.532 kb on + strand at 1553.533 kb on - strand at 1553.533 kb on - strand at 1554.133 kb on + strand, within AMB_RS07210 at 1554.134 kb on - strand, within AMB_RS07210 at 1554.134 kb on - strand, within AMB_RS07210 at 1554.134 kb on - strand, within AMB_RS07210 at 1554.259 kb on + strand, within AMB_RS07210 at 1554.259 kb on + strand, within AMB_RS07210 at 1554.260 kb on - strand, within AMB_RS07210 at 1554.260 kb on - strand, within AMB_RS07210 at 1554.260 kb on - strand, within AMB_RS07210 at 1554.380 kb on + strand, within AMB_RS07210 at 1554.793 kb on + strand, within AMB_RS07210 at 1554.793 kb on + strand, within AMB_RS07210 at 1554.957 kb on + strand, within AMB_RS07210 at 1554.957 kb on + strand, within AMB_RS07210 at 1554.957 kb on + strand, within AMB_RS07210 at 1554.957 kb on + strand, within AMB_RS07210 at 1554.957 kb on + strand, within AMB_RS07210 at 1554.958 kb on - strand, within AMB_RS07210 at 1554.958 kb on - strand, within AMB_RS07210 at 1554.958 kb on - strand, within AMB_RS07210 at 1554.958 kb on - strand, within AMB_RS07210 at 1555.162 kb on + strand at 1555.162 kb on + strand at 1555.241 kb on - strand at 1555.416 kb on + strand at 1555.538 kb on + strand at 1555.538 kb on + strand at 1555.538 kb on + strand at 1555.538 kb on + strand at 1555.539 kb on - strand at 1555.539 kb on - strand at 1555.539 kb on - strand at 1555.605 kb on + strand at 1555.605 kb on + strand at 1555.606 kb on - strand at 1555.833 kb on + strand, within AMB_RS07215 at 1555.833 kb on + strand, within AMB_RS07215 at 1555.834 kb on - strand, within AMB_RS07215 at 1555.834 kb on - strand, within AMB_RS07215 at 1555.834 kb on - strand, within AMB_RS07215
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,552,610 + AMB_RS07205 0.36 +0.1 1,552,611 - AMB_RS07205 0.36 -0.8 1,552,677 + AMB_RS07205 0.42 -0.8 1,552,712 + AMB_RS07205 0.45 +0.5 1,552,713 - AMB_RS07205 0.45 -2.5 1,552,713 - AMB_RS07205 0.45 -0.6 1,552,713 - AMB_RS07205 0.45 +0.5 1,553,123 + AMB_RS07205 0.79 -0.5 1,553,124 - AMB_RS07205 0.79 +0.0 1,553,124 - AMB_RS07205 0.79 -0.0 1,553,124 - AMB_RS07205 0.79 -1.9 1,553,124 - AMB_RS07205 0.79 +2.0 1,553,411 - +0.5 1,553,453 + -0.4 1,553,454 - +0.5 1,553,532 + -2.1 1,553,533 - -1.5 1,553,533 - -2.6 1,554,133 + AMB_RS07210 0.37 -0.1 1,554,134 - AMB_RS07210 0.37 +0.9 1,554,134 - AMB_RS07210 0.37 +0.3 1,554,134 - AMB_RS07210 0.37 -2.3 1,554,259 + AMB_RS07210 0.44 -0.4 1,554,259 + AMB_RS07210 0.44 +0.6 1,554,260 - AMB_RS07210 0.44 +0.4 1,554,260 - AMB_RS07210 0.44 -2.6 1,554,260 - AMB_RS07210 0.44 -2.4 1,554,380 + AMB_RS07210 0.51 -2.8 1,554,793 + AMB_RS07210 0.74 -0.2 1,554,793 + AMB_RS07210 0.74 +0.4 1,554,957 + AMB_RS07210 0.84 +1.3 1,554,957 + AMB_RS07210 0.84 +1.9 1,554,957 + AMB_RS07210 0.84 -1.1 1,554,957 + AMB_RS07210 0.84 -3.7 1,554,957 + AMB_RS07210 0.84 -0.1 1,554,958 - AMB_RS07210 0.84 +0.8 1,554,958 - AMB_RS07210 0.84 +0.6 1,554,958 - AMB_RS07210 0.84 -0.1 1,554,958 - AMB_RS07210 0.84 +1.5 1,555,162 + +0.5 1,555,162 + -0.9 1,555,241 - -0.9 1,555,416 + +0.4 1,555,538 + +1.6 1,555,538 + -2.1 1,555,538 + +0.3 1,555,538 + -1.3 1,555,539 - -0.6 1,555,539 - -0.3 1,555,539 - -1.4 1,555,605 + +0.4 1,555,605 + -3.3 1,555,606 - +0.0 1,555,833 + AMB_RS07215 0.21 -0.5 1,555,833 + AMB_RS07215 0.21 +1.2 1,555,834 - AMB_RS07215 0.21 -0.6 1,555,834 - AMB_RS07215 0.21 -0.7 1,555,834 - AMB_RS07215 0.21 -3.2
Or see this region's nucleotide sequence