Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07205

Experiment: 150_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07195 and AMB_RS07200 are separated by 154 nucleotidesAMB_RS07200 and AMB_RS07205 are separated by 244 nucleotidesAMB_RS07205 and AMB_RS07210 are separated by 120 nucleotides AMB_RS07195: AMB_RS07195 - acetate--CoA ligase, at 1,549,997 to 1,551,577 _RS07195 AMB_RS07200: AMB_RS07200 - (2Fe-2S)-binding protein, at 1,551,732 to 1,551,941 _RS07200 AMB_RS07205: AMB_RS07205 - hypothetical protein, at 1,552,186 to 1,553,367 _RS07205 AMB_RS07210: AMB_RS07210 - permease, at 1,553,488 to 1,555,242 _RS07210 Position (kb) 1552 1553 1554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1551.392 kb on + strand, within AMB_RS07195at 1551.392 kb on + strand, within AMB_RS07195at 1551.393 kb on - strand, within AMB_RS07195at 1551.538 kb on + strandat 1551.538 kb on + strandat 1551.725 kb on + strandat 1551.725 kb on + strandat 1551.726 kb on - strandat 1551.726 kb on - strandat 1551.726 kb on - strandat 1551.726 kb on - strandat 1551.937 kb on + strandat 1551.937 kb on + strandat 1551.937 kb on + strandat 1551.937 kb on + strandat 1551.937 kb on + strandat 1551.938 kb on - strandat 1551.938 kb on - strandat 1551.938 kb on - strandat 1551.938 kb on - strandat 1551.938 kb on - strandat 1551.956 kb on + strandat 1551.956 kb on + strandat 1551.957 kb on - strandat 1551.957 kb on - strandat 1551.957 kb on - strandat 1552.113 kb on - strandat 1552.113 kb on - strandat 1552.113 kb on - strandat 1552.124 kb on + strandat 1552.125 kb on - strandat 1552.154 kb on - strandat 1552.154 kb on - strandat 1552.610 kb on + strand, within AMB_RS07205at 1552.611 kb on - strand, within AMB_RS07205at 1552.677 kb on + strand, within AMB_RS07205at 1552.712 kb on + strand, within AMB_RS07205at 1552.713 kb on - strand, within AMB_RS07205at 1552.713 kb on - strand, within AMB_RS07205at 1552.713 kb on - strand, within AMB_RS07205at 1553.123 kb on + strand, within AMB_RS07205at 1553.124 kb on - strand, within AMB_RS07205at 1553.124 kb on - strand, within AMB_RS07205at 1553.124 kb on - strand, within AMB_RS07205at 1553.124 kb on - strand, within AMB_RS07205at 1553.411 kb on - strandat 1553.453 kb on + strandat 1553.454 kb on - strandat 1553.532 kb on + strandat 1553.533 kb on - strandat 1553.533 kb on - strandat 1554.133 kb on + strand, within AMB_RS07210at 1554.134 kb on - strand, within AMB_RS07210at 1554.134 kb on - strand, within AMB_RS07210at 1554.134 kb on - strand, within AMB_RS07210at 1554.259 kb on + strand, within AMB_RS07210at 1554.259 kb on + strand, within AMB_RS07210at 1554.260 kb on - strand, within AMB_RS07210at 1554.260 kb on - strand, within AMB_RS07210at 1554.260 kb on - strand, within AMB_RS07210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
remove
1,551,392 + AMB_RS07195 0.88 +0.0
1,551,392 + AMB_RS07195 0.88 -0.8
1,551,393 - AMB_RS07195 0.88 -0.9
1,551,538 + +0.1
1,551,538 + -1.7
1,551,725 + -1.5
1,551,725 + +0.5
1,551,726 - +0.4
1,551,726 - +4.6
1,551,726 - -0.6
1,551,726 - -0.2
1,551,937 + -3.4
1,551,937 + -0.7
1,551,937 + +0.2
1,551,937 + -1.1
1,551,937 + +0.2
1,551,938 - -1.4
1,551,938 - -1.7
1,551,938 - -0.5
1,551,938 - -0.5
1,551,938 - -0.3
1,551,956 + +1.5
1,551,956 + -0.1
1,551,957 - -1.1
1,551,957 - -0.7
1,551,957 - -0.5
1,552,113 - -3.3
1,552,113 - -1.8
1,552,113 - +0.3
1,552,124 + -2.7
1,552,125 - -2.4
1,552,154 - +0.3
1,552,154 - -1.3
1,552,610 + AMB_RS07205 0.36 +0.1
1,552,611 - AMB_RS07205 0.36 -0.8
1,552,677 + AMB_RS07205 0.42 -0.8
1,552,712 + AMB_RS07205 0.45 +0.5
1,552,713 - AMB_RS07205 0.45 -2.5
1,552,713 - AMB_RS07205 0.45 -0.6
1,552,713 - AMB_RS07205 0.45 +0.5
1,553,123 + AMB_RS07205 0.79 -0.5
1,553,124 - AMB_RS07205 0.79 +0.0
1,553,124 - AMB_RS07205 0.79 -0.0
1,553,124 - AMB_RS07205 0.79 -1.9
1,553,124 - AMB_RS07205 0.79 +2.0
1,553,411 - +0.5
1,553,453 + -0.4
1,553,454 - +0.5
1,553,532 + -2.1
1,553,533 - -1.5
1,553,533 - -2.6
1,554,133 + AMB_RS07210 0.37 -0.1
1,554,134 - AMB_RS07210 0.37 +0.9
1,554,134 - AMB_RS07210 0.37 +0.3
1,554,134 - AMB_RS07210 0.37 -2.3
1,554,259 + AMB_RS07210 0.44 -0.4
1,554,259 + AMB_RS07210 0.44 +0.6
1,554,260 - AMB_RS07210 0.44 +0.4
1,554,260 - AMB_RS07210 0.44 -2.6
1,554,260 - AMB_RS07210 0.44 -2.4

Or see this region's nucleotide sequence