Experiment: 150_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06630 and AMB_RS06635 are separated by 47 nucleotides AMB_RS06635 and AMB_RS06640 are separated by 4 nucleotides AMB_RS06640 and AMB_RS06645 are separated by 20 nucleotides AMB_RS06645 and AMB_RS06650 are separated by 4 nucleotides
AMB_RS06630: AMB_RS06630 - hypothetical protein, at 1,423,427 to 1,425,004
_RS06630
AMB_RS06635: AMB_RS06635 - ParA family protein, at 1,425,052 to 1,425,696
_RS06635
AMB_RS06640: AMB_RS06640 - integral membrane protein, at 1,425,701 to 1,426,186
_RS06640
AMB_RS06645: AMB_RS06645 - NUDIX domain-containing protein, at 1,426,207 to 1,426,815
_RS06645
AMB_RS06650: AMB_RS06650 - membrane protein, at 1,426,820 to 1,427,440
_RS06650
Position (kb) 1425
1426
1427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1424.714 kb on + strand, within AMB_RS06630 at 1424.715 kb on - strand, within AMB_RS06630 at 1424.754 kb on - strand, within AMB_RS06630 at 1424.754 kb on - strand, within AMB_RS06630 at 1425.199 kb on + strand, within AMB_RS06635 at 1425.725 kb on + strand at 1425.726 kb on - strand at 1425.726 kb on - strand at 1425.858 kb on + strand, within AMB_RS06640 at 1425.858 kb on + strand, within AMB_RS06640 at 1425.859 kb on - strand, within AMB_RS06640 at 1426.013 kb on + strand, within AMB_RS06640 at 1426.014 kb on - strand, within AMB_RS06640 at 1426.014 kb on - strand, within AMB_RS06640 at 1426.014 kb on - strand, within AMB_RS06640 at 1426.092 kb on - strand, within AMB_RS06640 at 1426.261 kb on + strand at 1426.373 kb on - strand, within AMB_RS06645 at 1426.373 kb on - strand, within AMB_RS06645 at 1426.373 kb on - strand, within AMB_RS06645 at 1426.427 kb on - strand, within AMB_RS06645 at 1426.427 kb on - strand, within AMB_RS06645 at 1426.567 kb on + strand, within AMB_RS06645 at 1426.610 kb on - strand, within AMB_RS06645 at 1426.610 kb on - strand, within AMB_RS06645 at 1426.914 kb on + strand, within AMB_RS06650
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_2 remove 1,424,714 + AMB_RS06630 0.82 -2.7 1,424,715 - AMB_RS06630 0.82 +1.1 1,424,754 - AMB_RS06630 0.84 -0.5 1,424,754 - AMB_RS06630 0.84 -1.8 1,425,199 + AMB_RS06635 0.23 +0.4 1,425,725 + -3.1 1,425,726 - -0.1 1,425,726 - -0.9 1,425,858 + AMB_RS06640 0.32 -0.1 1,425,858 + AMB_RS06640 0.32 -0.8 1,425,859 - AMB_RS06640 0.33 -1.3 1,426,013 + AMB_RS06640 0.64 -1.3 1,426,014 - AMB_RS06640 0.64 -1.8 1,426,014 - AMB_RS06640 0.64 -0.5 1,426,014 - AMB_RS06640 0.64 -0.1 1,426,092 - AMB_RS06640 0.80 -1.9 1,426,261 + -0.0 1,426,373 - AMB_RS06645 0.27 +0.0 1,426,373 - AMB_RS06645 0.27 -0.5 1,426,373 - AMB_RS06645 0.27 -1.1 1,426,427 - AMB_RS06645 0.36 -1.1 1,426,427 - AMB_RS06645 0.36 -1.5 1,426,567 + AMB_RS06645 0.59 +0.4 1,426,610 - AMB_RS06645 0.66 -0.7 1,426,610 - AMB_RS06645 0.66 -0.2 1,426,914 + AMB_RS06650 0.15 +2.6
Or see this region's nucleotide sequence