Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06490

Experiment: 150_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_2
1,390,546	+		AMB_RS06490	0.38	-0.0
1,390,647	-		AMB_RS06490	0.40	-0.8
1,390,686	+		AMB_RS06490	0.41	+1.5
1,390,752	+		AMB_RS06490	0.42	+0.7
1,390,753	-		AMB_RS06490	0.42	-2.1
1,391,216	-		AMB_RS06490	0.50	-0.4
1,391,349	+		AMB_RS06490	0.53	-0.5
1,391,349	+		AMB_RS06490	0.53	-1.9
1,391,349	+		AMB_RS06490	0.53	-0.5
1,391,349	+		AMB_RS06490	0.53	-0.1
1,391,349	+		AMB_RS06490	0.53	+0.5
1,391,349	+		AMB_RS06490	0.53	+0.5
1,391,350	-		AMB_RS06490	0.53	-0.2
1,391,350	-		AMB_RS06490	0.53	+0.3
1,391,350	-		AMB_RS06490	0.53	-2.9
1,391,350	-		AMB_RS06490	0.53	-1.3
1,391,350	-		AMB_RS06490	0.53	-2.2
1,391,350	-		AMB_RS06490	0.53	-2.0
1,391,350	-		AMB_RS06490	0.53	-0.1
1,391,350	-		AMB_RS06490	0.53	-0.0
1,391,412	+		AMB_RS06490	0.54	-2.6
1,391,412	+		AMB_RS06490	0.54	-0.1
1,391,412	+		AMB_RS06490	0.54	-0.4
1,391,413	-		AMB_RS06490	0.54	-0.8
1,391,413	-		AMB_RS06490	0.54	-0.6
1,391,413	-		AMB_RS06490	0.54	-1.7
1,391,413	-		AMB_RS06490	0.54	-1.6
1,391,413	-		AMB_RS06490	0.54	-1.1
1,391,436	-		AMB_RS06490	0.54	-0.1
1,391,562	+		AMB_RS06490	0.56	-0.4
1,391,562	+		AMB_RS06490	0.56	+0.1
1,391,563	-		AMB_RS06490	0.56	-0.1
1,391,563	-		AMB_RS06490	0.56	+0.4
1,391,721	+		AMB_RS06490	0.59	-1.3
1,391,721	+		AMB_RS06490	0.59	-0.1
1,391,722	-		AMB_RS06490	0.59	-0.5
1,391,722	-		AMB_RS06490	0.59	-0.9
1,391,776	-		AMB_RS06490	0.60	+0.1
1,391,776	-		AMB_RS06490	0.60	-1.8
1,391,776	-		AMB_RS06490	0.60	-1.1
1,391,776	-		AMB_RS06490	0.60	-0.2
1,391,970	+		AMB_RS06490	0.64	-0.8
1,391,971	-		AMB_RS06490	0.64	-0.4
1,391,971	-		AMB_RS06490	0.64	-0.5
1,391,971	-		AMB_RS06490	0.64	-0.1
1,391,971	-		AMB_RS06490	0.64	-1.6
1,391,971	-		AMB_RS06490	0.64	-0.1
1,391,973	-		AMB_RS06490	0.64	-1.1
1,392,033	+		AMB_RS06490	0.65	+1.5
1,392,124	-		AMB_RS06490	0.67	+1.1
1,392,124	-		AMB_RS06490	0.67	-0.1
1,392,350	+		AMB_RS06490	0.71	+0.3
1,392,351	-		AMB_RS06490	0.71	+0.1
1,392,351	-		AMB_RS06490	0.71	+0.3
1,392,351	-		AMB_RS06490	0.71	-0.0
1,392,351	-		AMB_RS06490	0.71	-1.0
1,392,444	+		AMB_RS06490	0.72	-0.8
1,392,445	-		AMB_RS06490	0.72	-0.1
1,392,492	+		AMB_RS06490	0.73	-0.1
1,392,492	+		AMB_RS06490	0.73	-1.3
1,392,492	+		AMB_RS06490	0.73	-0.5
1,392,687	+		AMB_RS06490	0.77	-0.2
1,392,687	+		AMB_RS06490	0.77	-0.6
1,392,688	-		AMB_RS06490	0.77	-1.3
1,392,688	-		AMB_RS06490	0.77	-1.5
1,392,688	-		AMB_RS06490	0.77	+0.3
1,392,688	-		AMB_RS06490	0.77	-2.3
1,392,714	+		AMB_RS06490	0.77	-1.5
1,392,715	-		AMB_RS06490	0.77	+4.4
1,392,733	-		AMB_RS06490	0.77	-1.1
1,392,733	-		AMB_RS06490	0.77	-0.4
1,392,733	-		AMB_RS06490	0.77	-0.1
1,392,733	-		AMB_RS06490	0.77	-1.2
1,392,733	-		AMB_RS06490	0.77	-2.2
1,392,734	+		AMB_RS06490	0.77	-1.3
1,392,735	-		AMB_RS06490	0.78	-0.6
1,392,735	-		AMB_RS06490	0.78	+0.3
1,392,735	-		AMB_RS06490	0.78	-0.3
1,392,735	-		AMB_RS06490	0.78	-0.0
1,392,735	-		AMB_RS06490	0.78	-0.7
1,392,931	-		AMB_RS06490	0.81	-1.3
1,392,951	+		AMB_RS06490	0.81	+0.1
1,392,951	+		AMB_RS06490	0.81	+0.4
1,392,951	+		AMB_RS06490	0.81	-1.5
1,392,951	+		AMB_RS06490	0.81	-1.3
1,392,951	+		AMB_RS06490	0.81	-0.2
1,392,952	-		AMB_RS06490	0.81	-1.8
1,392,952	-		AMB_RS06490	0.81	-0.5
1,393,013	+		AMB_RS06490	0.82	+0.4
1,393,013	+		AMB_RS06490	0.82	-0.8
1,393,013	+		AMB_RS06490	0.82	-2.6
1,393,013	+		AMB_RS06490	0.82	-0.3
1,393,013	+		AMB_RS06490	0.82	-1.9
1,393,013	+		AMB_RS06490	0.82	-0.1
1,393,014	-		AMB_RS06490	0.83	-1.1
1,393,026	+		AMB_RS06490	0.83	-0.1
1,393,083	+		AMB_RS06490	0.84	-3.0
1,393,084	-		AMB_RS06490	0.84	-0.5
1,393,084	-		AMB_RS06490	0.84	-0.2
1,393,084	-		AMB_RS06490	0.84	-2.3
1,393,084	-		AMB_RS06490	0.84	-1.5
1,393,084	-		AMB_RS06490	0.84	-1.3
1,393,084	-		AMB_RS06490	0.84	-1.3
1,393,122	+		AMB_RS06490	0.84	-0.1
1,393,122	+		AMB_RS06490	0.84	+0.5
1,393,122	+		AMB_RS06490	0.84	-0.6
1,393,123	-		AMB_RS06490	0.84	-1.3
1,393,194	+		AMB_RS06490	0.86	-1.2
1,393,194	+		AMB_RS06490	0.86	-0.2
1,393,195	-		AMB_RS06490	0.86	-0.8
1,393,548	+				-0.8
1,393,549	-				-0.8
1,393,810	+				-0.8
1,393,810	+				-0.2
1,393,810	+				-0.4
1,393,810	+				+0.5
1,393,811	-				-1.3
1,393,811	-				+0.5
1,393,811	-				-0.1
1,393,986	+				+0.4
1,393,986	+				+0.3
1,393,986	+				-0.3
1,393,987	-				-0.2
1,394,078	-		AMB_RS06495	0.29	-0.5
1,394,079	+		AMB_RS06495	0.29	-1.6
1,394,079	+		AMB_RS06495	0.29	-2.6
1,394,079	+		AMB_RS06495	0.29	+0.2
1,394,079	+		AMB_RS06495	0.29	-3.2
1,394,080	-		AMB_RS06495	0.30	-1.3
1,394,080	-		AMB_RS06495	0.30	+0.7
1,394,080	-		AMB_RS06495	0.30	-0.0
1,394,080	-		AMB_RS06495	0.30	+0.1
1,394,080	-		AMB_RS06495	0.30	-0.4
1,394,321	-		AMB_RS06495	0.51	-1.6
1,394,417	+		AMB_RS06495	0.59	+0.5
1,394,417	+		AMB_RS06495	0.59	-0.9
1,394,417	+		AMB_RS06495	0.59	-3.5
1,394,418	-		AMB_RS06495	0.59	-1.5
1,394,470	+		AMB_RS06495	0.64	+0.2
1,394,470	+		AMB_RS06495	0.64	+0.5
1,394,471	-		AMB_RS06495	0.64	-0.6
1,394,471	-		AMB_RS06495	0.64	-0.4
1,394,471	-		AMB_RS06495	0.64	-1.3
1,394,629	+		AMB_RS06495	0.77	+0.1
1,394,629	+		AMB_RS06495	0.77	-1.1
1,394,629	+		AMB_RS06495	0.77	-2.1
1,394,629	+		AMB_RS06495	0.77	-0.2
1,394,630	-		AMB_RS06495	0.78	-0.6
1,394,630	-		AMB_RS06495	0.78	+0.1
1,394,630	-		AMB_RS06495	0.78	-1.6
1,394,686	+		AMB_RS06495	0.82	-1.4
1,394,686	+		AMB_RS06495	0.82	-2.4
1,394,686	+		AMB_RS06495	0.82	+0.4
1,394,687	-		AMB_RS06495	0.83	-1.5
1,394,687	-		AMB_RS06495	0.83	-1.6
1,394,687	-		AMB_RS06495	0.83	-0.1
1,394,687	-		AMB_RS06495	0.83	-0.3
1,394,687	-		AMB_RS06495	0.83	-1.3
1,394,777	+				-0.6
1,394,778	-				-1.5
1,394,778	-				-1.3
1,394,914	+				+0.6
1,394,914	+				-2.6
1,394,914	+				-0.9
1,394,915	-				-1.9
1,394,915	-				-1.1
1,394,951	-				-0.9