Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06425

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06420 and AMB_RS06425 are separated by 29 nucleotidesAMB_RS06425 and AMB_RS06430 are separated by 130 nucleotides AMB_RS06420: AMB_RS06420 - dihydroorotase, at 1,348,796 to 1,350,127 _RS06420 AMB_RS06425: AMB_RS06425 - asparagine synthase (glutamine-hydrolyzing), at 1,350,157 to 1,351,914 _RS06425 AMB_RS06430: AMB_RS06430 - glycosyltransferase, at 1,352,045 to 1,353,073 _RS06430 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1at 1350.143 kb on - strandat 1350.143 kb on - strandat 1350.147 kb on + strandat 1350.147 kb on + strandat 1350.148 kb on - strandat 1350.158 kb on + strandat 1350.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,350,143 - +0.1
1,350,143 - +0.3
1,350,147 + -1.6
1,350,147 + -2.8
1,350,148 - -0.9
1,350,158 + -0.1
1,350,166 - -1.6

Or see this region's nucleotide sequence