Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06410

Experiment: 150_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06405 and AMB_RS06410 overlap by 4 nucleotidesAMB_RS06410 and AMB_RS06415 are separated by 65 nucleotides AMB_RS06405: AMB_RS06405 - hypothetical protein, at 1,345,315 to 1,346,361 _RS06405 AMB_RS06410: AMB_RS06410 - metal-sulfur cluster assembly factor, at 1,346,358 to 1,346,663 _RS06410 AMB_RS06415: AMB_RS06415 - PAS domain S-box protein, at 1,346,729 to 1,348,735 _RS06415 Position (kb) 1346 1347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1345.478 kb on + strand, within AMB_RS06405at 1345.478 kb on + strand, within AMB_RS06405at 1345.478 kb on + strand, within AMB_RS06405at 1345.479 kb on - strand, within AMB_RS06405at 1345.479 kb on - strand, within AMB_RS06405at 1345.493 kb on + strand, within AMB_RS06405at 1345.494 kb on - strand, within AMB_RS06405at 1345.494 kb on - strand, within AMB_RS06405at 1345.596 kb on - strand, within AMB_RS06405at 1345.688 kb on + strand, within AMB_RS06405at 1346.153 kb on + strand, within AMB_RS06405at 1346.501 kb on - strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.545 kb on + strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.546 kb on - strand, within AMB_RS06410at 1346.695 kb on + strandat 1346.696 kb on - strandat 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.006 kb on + strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.007 kb on - strand, within AMB_RS06415at 1347.215 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.261 kb on + strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.262 kb on - strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.268 kb on + strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.269 kb on - strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.270 kb on + strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415at 1347.271 kb on - strand, within AMB_RS06415at 1347.375 kb on + strand, within AMB_RS06415

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_2
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1,345,478 + AMB_RS06405 0.16 -0.5
1,345,478 + AMB_RS06405 0.16 -2.8
1,345,478 + AMB_RS06405 0.16 -0.1
1,345,479 - AMB_RS06405 0.16 -2.1
1,345,479 - AMB_RS06405 0.16 -1.5
1,345,493 + AMB_RS06405 0.17 -1.4
1,345,494 - AMB_RS06405 0.17 +3.7
1,345,494 - AMB_RS06405 0.17 -1.6
1,345,596 - AMB_RS06405 0.27 -2.1
1,345,688 + AMB_RS06405 0.36 -4.1
1,346,153 + AMB_RS06405 0.80 +0.0
1,346,501 - AMB_RS06410 0.47 -0.3
1,346,545 + AMB_RS06410 0.61 +0.5
1,346,545 + AMB_RS06410 0.61 -0.5
1,346,545 + AMB_RS06410 0.61 -2.3
1,346,546 - AMB_RS06410 0.61 -0.1
1,346,546 - AMB_RS06410 0.61 -1.1
1,346,546 - AMB_RS06410 0.61 -2.9
1,346,546 - AMB_RS06410 0.61 -0.4
1,346,546 - AMB_RS06410 0.61 -0.5
1,346,546 - AMB_RS06410 0.61 -1.3
1,346,546 - AMB_RS06410 0.61 -2.1
1,346,695 + -1.3
1,346,696 - -2.6
1,347,006 + AMB_RS06415 0.14 -1.6
1,347,006 + AMB_RS06415 0.14 -1.1
1,347,006 + AMB_RS06415 0.14 -0.8
1,347,006 + AMB_RS06415 0.14 +0.5
1,347,007 - AMB_RS06415 0.14 -0.5
1,347,007 - AMB_RS06415 0.14 -1.3
1,347,007 - AMB_RS06415 0.14 -0.5
1,347,007 - AMB_RS06415 0.14 -1.1
1,347,215 + AMB_RS06415 0.24 -2.1
1,347,261 + AMB_RS06415 0.27 -0.8
1,347,261 + AMB_RS06415 0.27 -3.1
1,347,261 + AMB_RS06415 0.27 +1.3
1,347,261 + AMB_RS06415 0.27 +0.5
1,347,261 + AMB_RS06415 0.27 -1.6
1,347,262 - AMB_RS06415 0.27 +0.5
1,347,262 - AMB_RS06415 0.27 -0.2
1,347,262 - AMB_RS06415 0.27 +1.7
1,347,262 - AMB_RS06415 0.27 -2.3
1,347,262 - AMB_RS06415 0.27 +0.3
1,347,262 - AMB_RS06415 0.27 -0.7
1,347,268 + AMB_RS06415 0.27 +0.6
1,347,268 + AMB_RS06415 0.27 -1.0
1,347,268 + AMB_RS06415 0.27 -0.0
1,347,268 + AMB_RS06415 0.27 -1.0
1,347,269 - AMB_RS06415 0.27 -1.5
1,347,269 - AMB_RS06415 0.27 -0.3
1,347,269 - AMB_RS06415 0.27 -0.1
1,347,269 - AMB_RS06415 0.27 -1.1
1,347,269 - AMB_RS06415 0.27 -0.3
1,347,270 + AMB_RS06415 0.27 +0.5
1,347,270 + AMB_RS06415 0.27 -0.1
1,347,270 + AMB_RS06415 0.27 -0.5
1,347,270 + AMB_RS06415 0.27 -1.0
1,347,271 - AMB_RS06415 0.27 -1.6
1,347,271 - AMB_RS06415 0.27 -1.1
1,347,375 + AMB_RS06415 0.32 -1.5

Or see this region's nucleotide sequence